- Probe CUST_24401_PI390587928
- Source Contig U35_23202
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24401_PI390587928 | Hv_44K_v2 | ATGAGGAATTAGCCATGTTTTTGAAAAATGATGATATACTTGCCAAGGAGGCAAAGCTCA | 939 | GeneList: skyblue3 MasterList: Transcription_factors_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.112 | 1.016 | 1.309 | 1.005 | 0.465 | 0.616 |
| Raw | 18.715 | 24.956 | 30.749 | 32.406 | 5.392 | 8.541 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK367597 | 3754 | 2e-24 | 1705 - 1764 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | AK248433.1 | 2474 | 2e-24 | 1199 - 1258 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | AK374611 | 2307 | 2e-24 | 1144 - 1203 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.2 | 2386 | 2e-24 | 1404 - 1463 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.3 | 2710 | 2e-24 | 1695 - 1754 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.4 | 2492 | 2e-24 | 1510 - 1569 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.1 | 1706 | 2e-24 | 982 - 1041 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.7 | 2195 | 2e-24 | 724 - 783 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.8 | 2941 | 2e-24 | 1437 - 1496 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.9 | 2908 | 2e-24 | 1437 - 1496 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.12 | 2104 | 2e-24 | 1954 - 2013 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68305.11 | 1921 | 2e-24 | 820 - 879 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.10 | 2502 | 2e-24 | 1434 - 1493 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.5 | 2082 | 2e-24 | 1439 - 1498 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.6 | 2140 | 2e-24 | 726 - 785 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.8 | 1633 | 2e-24 | 267 - 326 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.10 | 1641 | 2e-24 | 258 - 317 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.5 | 1631 | 2e-24 | 102 - 161 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.1 | 1603 | 2e-24 | 252 - 311 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.6 | 1574 | 2e-24 | 282 - 341 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.3 | 1567 | 2e-24 | 201 - 260 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.7 | 1363 | 2e-24 | 282 - 341 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.9 | 1351 | 2e-24 | 262 - 321 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.4 | 1712 | 2e-24 | 201 - 260 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.2 | 1814 | 2e-24 | 252 - 311 | 100 | 60 / 60 | plus | ABC19920 |
| JLOC1 | JLOC1_45181.6 | 2172 | 8e-25 | 718 - 777 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45181.5 | 2856 | 8e-25 | 1435 - 1494 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45181.4 | 2847 | 8e-25 | 1435 - 1494 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45181.3 | 2889 | 8e-25 | 1435 - 1494 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45181.2 | 2600 | 8e-25 | 1146 - 1205 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45181.1 | 2205 | 8e-25 | 784 - 843 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14670.4 | 1502 | 8e-25 | 92 - 151 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14670.3 | 1567 | 8e-25 | 124 - 183 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14670.2 | 1699 | 8e-25 | 256 - 315 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14670.1 | 1666 | 8e-25 | 256 - 315 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17467 | 999 | 3e-25 | 940 - 999 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_23202 | 999 | 3e-25 | 940 - 999 | 100 | 60 / 60 | plus |
Contig Sequence (999 bp)
>U35_23202 999 Hv_44K_v2 CCAACCCCATCGGCGCCGGCGCCGGCGACGCGAGGCGACCAGACGGCTGTCATTTTCCCG AGGTTGGCGGGCGAACCCCTGTCCAGGTAGCTGCCTCGCCCTCCCCCTGCGCCGTTGAGA GCGAGGAGGAGGAGGAGGCGATGGGGACCATGACGATCGGTGCCAAGTACAAGACCACGC TCAAGGACCCGGGCCACGGCGGCGTCCTCCGCATGAGCGAAGATAAGTTAATATTTACCC CTAACGATCCACGCTCACTAATGAAGCTCAGTGTAGATTTCCGAAGCATCAAAGGCCACA AATTTAATAAGGTTGATGGTAGCAAACCAACACCGCCATTATTGAATCTTTCAAAAGTTT CTGACAAGGGGGGAGGCTATATTTTTGAGTTTGACAATGTTGGTAACCGTGATTTGTGCC GTGATTTTGTAGCTAGGGTTTTAGGTAAGCATCAAGGTACTGTGCCTGCTAGACCAAATG TACCTCCTGAAAAATTAGCCGTGTCGACTGGTCCAGAACAGCTCAGTTCTGCCGAAATGG AACGCCGGATGAAATTGCTACGAGAAGACAGTGAACTGCAGAAGTTGCATAAGAAGTTTG TGCTTGGCAATATTCTGCAAGAGTCTGAATTTTGGGCAACAAGAAAGAATTTACTTGATG ATGAAACAAACAAATCATCAAAACAAAAGCCAGGTTTCAAAAGTGCCATGCTAGCTGATG TTAGGCCATCAGCTGATGGACAGACAAACAAGGTTACTTTCAGTCTGACTACTGAGATTA TCCATCAGATTTTTGCAGAAAAGCCAGCCGTGCATCGGGCATTTTTAGATTATGTTCCAA AGAAGTTGTCAGAAAAGGATTTTTGGACAAAATACTGTAGAGCTGAGTATCTACTTAGGA CAAAAAATACTTTAGCGGCAAAAGCTGAAGCTGCTGACGATGAGGAATTAGCCATGTTTT TGAAAAATGATGATATACTTGCCAAGGAGGCAAAGCTCA
Homology of Contig U35_23202 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g25060.1 | 605 | 4e-162 | protein|BSD domain-containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g16990.1 | 603 | 2e-172 | |
| Arabidopsis v10 | AT3G61420.1 | 579 | 8e-85 | BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) | chr3:22727235-22731760 REVERSE LENGTH=579 |