- Probe CUST_16044_PI390587928
- Source Contig U35_45165
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16044_PI390587928 | Hv_44K_v2 | TGAACTTATGGATCATTGGACGGCTATCCAGGAGTTGCTGCGCCATTTTTGGTCATCATA | 461 | GeneList: white MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.090 | 1.579 | 1.519 | 1.305 | 0.501 | 0.569 |
| Raw | 285.372 | 663.278 | 538.021 | 760.853 | 98.488 | 122.067 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK374611 | 2307 | 2e-24 | 1859 - 1918 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.2 | 2386 | 2e-24 | 2119 - 2178 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.3 | 2710 | 2e-24 | 2443 - 2502 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.4 | 2492 | 2e-24 | 2225 - 2284 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.7 | 2195 | 2e-24 | 1517 - 1576 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.8 | 2941 | 2e-24 | 2263 - 2322 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.9 | 2908 | 2e-24 | 2230 - 2289 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.11 | 1921 | 2e-24 | 1535 - 1594 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.10 | 2502 | 2e-24 | 2149 - 2208 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | MLOC_68305.6 | 2140 | 2e-24 | 1441 - 1500 | 100 | 60 / 60 | plus | ABC19920 |
| MLOC | AK367597 | 3754 | 7e-23 | 2597 - 2656 | 98 | 59 / 60 | plus | ABC19920 |
| MLOC | AK248433.1 | 2474 | 7e-23 | 1914 - 1973 | 98 | 59 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.8 | 1633 | 7e-23 | 1015 - 1074 | 98 | 59 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.10 | 1641 | 7e-23 | 1151 - 1210 | 98 | 59 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.5 | 1631 | 7e-23 | 995 - 1054 | 98 | 59 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.1 | 1603 | 7e-23 | 967 - 1026 | 98 | 59 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.6 | 1574 | 7e-23 | 1208 - 1267 | 98 | 59 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.3 | 1567 | 7e-23 | 949 - 1008 | 98 | 59 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.7 | 1363 | 7e-23 | 997 - 1056 | 98 | 59 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.4 | 1712 | 7e-23 | 1094 - 1153 | 98 | 59 / 60 | plus | ABC19920 |
| MLOC | MLOC_21142.2 | 1814 | 7e-23 | 1178 - 1237 | 98 | 59 / 60 | plus | ABC19920 |
| JLOC1 | JLOC1_45181.6 | 2172 | 8e-25 | 1466 - 1525 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45181.5 | 2856 | 8e-25 | 2150 - 2209 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45181.4 | 2847 | 8e-25 | 2150 - 2209 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45181.3 | 2889 | 8e-25 | 2183 - 2242 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45181.2 | 2600 | 8e-25 | 1894 - 1953 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45181.1 | 2205 | 8e-25 | 1499 - 1558 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14670.4 | 1502 | 4e-23 | 807 - 866 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_14670.3 | 1567 | 4e-23 | 872 - 931 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_14670.2 | 1699 | 4e-23 | 1004 - 1063 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_14670.1 | 1666 | 4e-23 | 971 - 1030 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC43654 | 526 | 3e-25 | 462 - 521 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19920 | 999 | 1e-23 | 477 - 536 | 98 | 59 / 60 | minus | ABC19920 |
| Harvest35 | U35_45165 | 526 | 3e-25 | 462 - 521 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36580 | 703 | 1e-23 | 464 - 523 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_6792 | 1407 | 1e-23 | 477 - 536 | 98 | 59 / 60 | plus |
Contig Sequence (526 bp)
>U35_45165 526 Hv_44K_v2 ATTGAATCAACTGATACGAAGACTGTGGCTGAAGCACTTGCAAGGTCCAAGAAAGAACCA CCTCCTAGCTCTGTTGCTGATGATGCTAGTCATGAGAGGTTGGTAAAGGCGGCCCGCATG ACTGAGTTAGAGGATCTGCAAGCTCCACGAAGTCTCCCATATGCACCACTTTGTATAAAG GATCCTCGAGAATATTTTGATTCTCAGCAAGCAAATGCTCTGAGACCTTTAGGTAACAAC GATGGAAGAAAGGCGCGCAGCTGCAGCCTGAGCGCCGATGATGCATTCCGTCATTTGATG GATCAAATATCTTCCGTGAAAATGAACTGTCCGGTTGTTCAGGCAGATGTTGCTCTGAAG GTTCTTAACGAATTGAATGAAGGAATTTCACGTTCACGGAGGCTTAATCTTAAGAATCCC CAAGACAGTCTCCTTGGTCGTCTTCCTCACCGAACACGAGATGAACTTATGGATCATTGG ACGGCTATCCAGGAGTTGCTGCGCCATTTTTGGTCATCATACCCGA
Homology of Contig U35_45165 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g25060.1 | 605 | 5e-97 | protein|BSD domain-containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g16990.1 | 603 | 1e-102 | |
| Arabidopsis v10 | None |