barSeed - Barley Seed Development Database

Probe ABC19284

Source Contig ABC19284

barSeed

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Affymetrix Source Sequence (575 bp)

>ABC19284 575
TGTAGCCACGCTGGCATTCAGGGAACAAGCCGTCCTGCTCATTATCACGTACTATGGGAT
GAGAACAAGTTCACTGCTGATGAGTTGCAAACTCTAACAAACAACTTGTGCTACACGTAT
GCTAGGTGCACCCGCTCTGTATCAATTGTGCCTCCAGCATATTATGCACATTTGGCAGCC
TTCCGGGCTCGGTTTTACATGGAGCCGGACACCTCGGATAGTGGGTCCATGGCAAGTGGT
GCCCGTGGCCCTCCACAGGGTGGACGCAATAACAGGGCGTTTGGGAATGTTGCTGTCAGG
CCCCTCCCCGCCCTGAAGGAAAACGTGAAGCGTGTCATGTTTTACTGTTAAGGTGGCCGT
GGTTACTGCTTACACTATTATGCAAACCTGAATCTATTTGACTGAGTTTGGGTGTGTTAT
TTGCACTGCATTGGTGGCGCTGGGAGAACACCGCCGTGCAAACTTCCGTCGTTGTGCCGT
GTGAAACTCTGTGTAACCATCTACCTATTTGTGTTGGTATCTGAACCACCATATATTATG
AAATTGTTTTCAGTTTGGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK250484.1	3791	0.0	3215 - 3788	100	574 / 574	CUST_1917_PI390587928 CUST_10673_PI390587928 CUST_37609_PI390587928 CUST_28432_PI390587928	ABC06398 ABC19284 ABC38126
AK250313.1	3742	0.0	3185 - 3742	100	558 / 558	CUST_10673_PI390587928 CUST_1917_PI390587928 CUST_37609_PI390587928 CUST_28432_PI390587928	ABC06398 ABC19284 ABC38126
MLOC_55785.2	1825	0.0	1 - 492	100	492 / 492	CUST_37609_PI390587928	ABC06398 ABC19284 ABC38126
MLOC_55785.3	1744	0.0	1 - 491	100	491 / 491	CUST_37609_PI390587928	ABC06398 ABC19284 ABC38126
MLOC_55785.1	1881	4e-56	506 - 624	100	119 / 119	CUST_37609_PI390587928 CUST_10673_PI390587928	ABC06398 ABC19284 ABC38126
MLOC_55785.4	1363	4e-135	1 - 261	100	261 / 261	CUST_37609_PI390587928	ABC06398 ABC19284 ABC38126
MLOC_55785.5	1299	6e-104	1 - 205	100	205 / 205	CUST_37609_PI390587928	ABC06398 ABC19284 ABC38126