barSeed - Barley Seed Development Database

Probe CUST_10673_PI390587928

Source Contig U35_20846

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10673_PI390587928	Hv_44K_v2	GTGAAACTCTGTGTAACCATCTACCTATTTGTGTTGGTATCTGAACCACCATATATTATG	593	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.556	1.639	1.123	0.879	0.378	0.550
Raw	1595.417	2694.438	1594.487	2002.365	295.856	466.440

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250484.1	3791	2e-24	3695 - 3754	100	60 / 60	plus	ABC06398 ABC19284 ABC38126
MLOC	AK250313.1	3742	2e-24	3665 - 3724	100	60 / 60	plus	ABC06398 ABC19284 ABC38126
MLOC	MLOC_55785.1	1881	2e-24	2 - 61	100	60 / 60	minus	ABC06398 ABC19284 ABC38126
JLOC1	JLOC1_36024.1	1654	8e-25	1514 - 1573	100	60 / 60	plus
Harvest21	ABC19284	575	3e-25	481 - 540	100	60 / 60	plus	ABC19284
Harvest35	U35_20846	739	3e-25	594 - 653	100	60 / 60	plus

Contig Sequence (739 bp)

>U35_20846 739 Hv_44K_v2
TATAGGGCGAATTGGGCCCTTTCGAAGATGCTCGAGCGGCCGCTCGGATACTACTGCCTG
GCACTGTTGTTGATTCAAAGATTTGCCATCCGACCGAGTTTGATTTCTACTTGTGTAGCC
ACGCTGGCATTCAGGGAACAAGCCGTCCTGCTCATTATCACGTACTATGGGATGAGAACA
AGTTCACTGCTGATGAGTTGCAAACTCTAACAAACAACTTGTGCTACACGTATGCTAGGT
GCACCCGCTCTGTATCAATTGTGCCTCCAGCATATTATGCACATTTGGCAGCCTTCCGGG
CTCGGTTTTACATGGAGCCGGACACCTCGGATAGTGGGTCCATGGCAAGTGGTGCCCGTG
GCCCTCCACAGGGTGGACGCAATAACAGGGCGTTTGGGAATGTTGCTGTCAGGCCCCTCC
CCGCCCTGAAGGAAAACGTGAAGCGTGTCATGTTTTACTGTTAAGGTGGCCGTGGTTACT
GCTTACACTATTATGCAAACCTGAATCTATTTGACTGAGTTTGGGTGTGTTATTTGCACT
GCATTGGTGGCGCTGGGAGAACACCGCCGTGCAAACTTCCGTCGTTGTGCCGTGTGAAAC
TCTGTGTAACCATCTACCTATTTGTGTTGGTATCTGAACCACCATATATTATGAAATTGT
TTTCAGTTTGGAAAAAAAAAAAAAAAAACCTCTTGGTTTCAAAATTGGTCATGTTGGAAA
GGAAAAAAAAAAAAAAAAA

Homology of Contig U35_20846 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g47870.2	1102	7e-81	protein\|PINHEAD, putative, expressed
Brachypodium v1_2	Bradi5g18540.1	1095	2e-87
Arabidopsis v10	AT1G48410.2	1050	1e-75	\| Symbols: AGO1 \| Stabilizer of iron transporter SufD / Polynucleotidyl transferase \| chr1:17886285-17891892 REVERSE LENGTH=1050