barSeed - Barley Seed Development Database

Probe ABC06398

Source Contig ABC06398

barSeed

Links

Affymetrix Source Sequence (2186 bp)

>ABC06398 2186
GACATCACAAGCAACGCGAGAGCTATCATTCCCTGTTGATGATCGCGGTACTGTGAAGAC
TGTGGTGCAATACTTCCTGGAGACGTATGGTTTCAATATTCAGCACACCACTTTACCATG
CTTGCAAGTCGGTAATCAGCAAAGGCCAAATTATCTCCCCATGGAGGTTTGTAAAATTGT
TGAAGGACAACGCTACTCAAAACGACTGAATGAAAAACAAATAACTGCTCTACTGAAAGT
GACTTGCCAGCGCCCTCAAGAGCGTGAGAAGGACATCTTGCAGACTGTGCATCACAATGC
GTACTACGAAGATCCATATGCACAGGAATTTGGCATAAAAATTGATGAGCAACTTGCATC
GGTTGAAGCTCGTGTTCTGCCTCCGCCAAGGCTTAAGTACCATGATAGTGGCAGAGAGAA
GGATGTCTTACCCAGGGTCGGCCAGTGGAACATGATGAACAAGAAAATGGTCAATGGTGG
TAGAGTCAGCCACTGGGCATGTATTAACTTCTCTCGGAATGTGCAAGATAATGCTGCCAA
GGTTTTCTGTCATGAGTTGGCTATAATGTGCCAAATATCTGGAATGAACTTTGCACCTGA
ACCTGTGCTGCCCGTACTTAGTGCGAGGCCTGAACACGTGGAAAGAGCTCTGAAGGCACG
TTATCATGATGCCATGAACGCAAGCAATCCCCCAGGCAAAGAACTTGACCTGCTAATTGT
TATACTGCCGGATAATAATGGTTCTCTTTATGGGGATCTTAAAAGGATTTGTGAGACTGA
ACTAGGATTGGTATCCCAGTGTTGTCTTACAAAACATGTGTTTAAGATGAGCAAGCAGTA
TCTTGCAAATGTAGCTCTTAAAATCAATGTTAAGGTCGGGGGAAGGAATACTGTACTCGT
GGATGCTTTGGCAAGGAGGATTCGCCTTGTTACTGACCGACCGACCATAATATTTGGTGC
TGATGTTACACATCCTCACCCTGGAGAAGATTCCAGCCCTTCCATTGCAGCTGTGGTTGC
TTCTCAAGACTGGCCTGAGATAACTAAGTACGCAGGATTAGTGAGTGCCCAAGCCCATAG
GCAAGAGCTGATACAGGATCTTTTTAAAGTATGGCAAGATCCCCAAAGAGGAACTGTGAC
TGGCGGCATGATCAAGGAGCTTCTCATATCTTTCAAGAGGGCAACTGGGCAGAAACCTCA
GAGAATCATATTTTACAGGGATGGTGTCAGCGAGGGACAGTTCTACCAAGTTCTGTTGTT
TGAACTTGATGCCATTAGGAAGGCCTGTGCATCCTTGGAGCCAAATTATCAGCCTCCAGT
TACTTTTGTGGTTGTCCAGAAGCGTCACCACACTAGGCTTTTTGCTAACAATCACAATGA
TCAGCGTACTGTCGATAGAAGCGGGAACATACTGCCTGGCACCGTTGTTGATTCGAAGAT
CTGCCATCCGACAGAATTCGATTTCTACTTGTGTAGCCATGCTGGCATTCAGGGAACAAG
CCGGCCTGCCCACTATCATGTTCTCTGGGACGAGAACAAATTTACTGCTGATGAGTTGCA
AACTCTCACAAACAACCTGTGCTACACGTATGCTCGATGCACCCGCTCTGTATCGATTGT
TCCTCCTGCATACTATGCCCATCTGGCAGCCTTCCGGGCTCGGTTCTACATGGAGCCGGA
CACCTCCGACAGCGGGTCCGTGGCGAGCGGTGCACGTGGCGGTCCTCCACAGGGCGGTCC
ACGCAGCAGCACCAGGTTTGGGAACGTTGCTGTCAGGCCTCTCCCCGCCCTCAAGGAAAA
CGTCAAGCGCGTCATGTTTTACTGCTAAGATCCTCGCAGTTACCGTGAGGTAACTTGAAG
CACCTGTGAGTCGTATTGGTGATGCTGTTCAACACCATTGTGGGAACCTAAACCAAAGTT
ATCTGCTGTACTCTGTTTCAACACCATTCTAAGTACCTGCACCGGATTGGTGACTAGTGT
GGCCGGTGCACAAACCTTTTAAGCTATTCGACTGAATTGGGCGTCATTTGTCTGTTGCGT
TGCGCCGGTGCTGCTGCGAGAAGCTTTTGCTTTCATGGCTGTGCCGCGTGAGATATCTGC
CTAGTCCTATATTTGTATCACTGGTGTTTAAAATATTTATGAACCTATGTCAAGGAATCA
CTTGCTAGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK373112	4115	0.0	1948 - 4115	100	2168 / 2168	CUST_37608_PI390587928 CUST_1916_PI390587928	ABC06398
MLOC_12447.4	3020	0.0	1242 - 3020	100	1779 / 1779	CUST_1916_PI390587928	ABC06398
MLOC_12447.1	3348	0.0	1243 - 1638	99	395 / 397	CUST_1916_PI390587928	ABC06398
MLOC_12447.3	3066	7e-173	2737 - 3066	100	330 / 330	CUST_1916_PI390587928	ABC06398
AK250484.1	3791	0.0	1748 - 3566	90	1651 / 1826	CUST_10673_PI390587928 CUST_37609_PI390587928 CUST_1917_PI390587928 CUST_28432_PI390587928	ABC06398 ABC19284 ABC38126
AK250313.1	3742	0.0	1718 - 3536	90	1651 / 1826	CUST_28432_PI390587928 CUST_37609_PI390587928 CUST_1917_PI390587928 CUST_10673_PI390587928	ABC06398 ABC19284 ABC38126
MLOC_12447.5	3169	0.0	2515 - 3169	99	655 / 656	CUST_1916_PI390587928	ABC06398
MLOC_55785.3	1744	0.0	140 - 1501	90	1226 / 1369	CUST_37609_PI390587928	ABC06398 ABC19284 ABC38126
MLOC_12447.2	3053	0.0	2186 - 2903	100	718 / 718	CUST_1916_PI390587928	ABC06398
MLOC_55785.1	1881	0.0	506 - 1634	91	1023 / 1130	CUST_10673_PI390587928 CUST_37609_PI390587928	ABC06398 ABC19284 ABC38126
MLOC_55785.4	1363	0.0	331 - 1362	91	937 / 1033	CUST_37609_PI390587928	ABC06398 ABC19284 ABC38126
MLOC_55785.2	1825	0.0	812 - 1569	91	690 / 759	CUST_37609_PI390587928	ABC06398 ABC19284 ABC38126
MLOC_55785.5	1299	0.0	1 - 525	90	473 / 525	CUST_37609_PI390587928	ABC06398 ABC19284 ABC38126
MLOC_44562.1	1041	0.0	4 - 462	93	428 / 459	CUST_28432_PI390587928	ABC06398
MLOC_39997.1	2356	6e-154	319 - 1226	78	711 / 915	None	ABC06398
MLOC_39997.4	1155	3e-152	2 - 910	78	711 / 916	None	ABC06398
MLOC_39997.2	2463	1e-136	508 - 1333	78	646 / 833	None	ABC06398
MLOC_21653.1	1186	4e-121	599 - 1186	80	474 / 591	None	ABC06398
MLOC_39997.3	1185	2e-78	312 - 705	80	316 / 394	None	ABC06398
MLOC_21653.2	380	1e-60	22 - 380	79	285 / 362	None	ABC06398