barSeed - Barley Seed Development Database

Probe ABC18549

Source Contig ABC18549

barSeed

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Affymetrix Source Sequence (613 bp)

>ABC18549 613
GAGAGCGAACTAGTCTCGAGTTTTAATTTTTCTGCCATTTTTCAAGGACGGTGTTCCACG
GGCAGCTTACAAGGGTGTGGTGGTCTTCCGATATAAGAGCAGTCGAAGACGAATATACCT
TGTCGGCCCTGACTCTCTTCGTCAACTCGGGGTTTAGCTTACGGTGCTGAGGTGGGAAAT
TTCTCTATTGCCACCCTGACTTAGCATAACATGGGCATATATGTAGTGCCAGATCAACAG
GGGGTGCAAAAATGAAGCAATGAATTATTTGACGATGGAGGATATGCATTTTCGCCCTCA
TGGCGTATAGTTAGTACAAGGGTCTATGTTAAAATGTGGTTGGGTTCGTCCGTCCCGCGC
GATCTGTAGTTACCATAAGTGAGTGTATTCAAAATTTTGTGTGTACGCGTTTACATAATG
CAACAAATGCATGGCCTAACAAGACAATTCCGCAAGAAACATATGACAGTAGAGTAACAA
CCATGGTTGTTCAGTTCTAATAAAGCAACCTAAGTTTTAGCCACAGTGCTAGTTGTACGT
GTTGGTTGTTTAATGGATACGTTCTGATTTGGTTGCACTTCCTCATATATGTTGCTAAAA
AAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_19196.3	1580	0.0	1041 - 1580	100	540 / 540	CUST_1956_PI390587928	ABC15789 ABC18549 ABC19664
MLOC_19196.2	1383	0.0	868 - 1383	100	516 / 516	CUST_1956_PI390587928 CUST_121_PI415269222 CUST_23193_PI390587928	ABC15789 ABC18549 ABC19664
MLOC_19196.15	1542	0.0	1053 - 1542	100	490 / 490	CUST_1956_PI390587928	ABC15789 ABC18549 ABC19664
MLOC_19196.8	1530	0.0	1052 - 1530	100	479 / 479	CUST_1956_PI390587928	ABC15789 ABC18549 ABC19664
AK374062	1766	0.0	1288 - 1766	99	476 / 479	CUST_1956_PI390587928 CUST_121_PI415269222 CUST_23193_PI390587928 CUST_19673_PI390587928	ABC15789 ABC18549 ABC19664
MLOC_19196.12	1903	0.0	1470 - 1903	100	434 / 434	CUST_1956_PI390587928 CUST_121_PI415269222 CUST_23193_PI390587928	ABC15789 ABC18549 ABC19664
MLOC_19196.13	1530	0.0	1097 - 1530	100	434 / 434	CUST_1956_PI390587928	ABC15789 ABC18549 ABC19664
AK249758.1	1754	0.0	1329 - 1754	99	423 / 426	CUST_1956_PI390587928	ABC15789 ABC18549 ABC19664
MLOC_19196.1	1149	2e-144	872 - 1149	100	278 / 278	CUST_1956_PI390587928	ABC15789 ABC18549 ABC19664
MLOC_19196.11	1076	2e-109	862 - 1076	100	215 / 215	CUST_1956_PI390587928	ABC15789 ABC18549 ABC19664
AK371466	1960	2e-74	1470 - 1621	100	152 / 152	CUST_37866_PI390587928 CUST_1956_PI390587928	ABC15789 ABC18549 ABC19664
MLOC_19196.4	1328	2e-74	1119 - 1270	100	152 / 152	CUST_1956_PI390587928	ABC15789 ABC18549 ABC19664
MLOC_19196.5	1420	2e-74	1037 - 1188	100	152 / 152	CUST_1956_PI390587928 CUST_121_PI415269222 CUST_23193_PI390587928	ABC15789 ABC18549 ABC19664
MLOC_19196.14	1568	2e-74	1091 - 1242	100	152 / 152	CUST_1956_PI390587928 CUST_121_PI415269222 CUST_23193_PI390587928	ABC15789 ABC18549 ABC19664
MLOC_19196.10	1481	2e-74	1080 - 1231	100	152 / 152	CUST_1956_PI390587928 CUST_121_PI415269222 CUST_23193_PI390587928	ABC15789 ABC18549 ABC19664
MLOC_19196.7	1115	4e-61	930 - 1057	100	128 / 128	CUST_1956_PI390587928	ABC15789 ABC18549 ABC19664
MLOC_19196.9	1293	4e-61	858 - 985	100	128 / 128	CUST_1956_PI390587928 CUST_16161_PI390587928	ABC15789 ABC18549 ABC19664
MLOC_19196.6	1320	4e-61	868 - 995	100	128 / 128	CUST_1956_PI390587928 CUST_121_PI415269222 CUST_23193_PI390587928	ABC15789 ABC18549 ABC19664