barSeed - Barley Seed Development Database

Probe CUST_1956_PI390587928

Source Contig U35_46784

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1956_PI390587928	Hv_44K_v2	TAAGCATGATTTTCGCCGAGTTATCATTCTGGAAGATGACATGGAGATCGCCCCCAGATT	377	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.681	1.009	1.514	1.559	0.892	0.819
Raw	27.110	58.818	83.260	133.343	27.040	26.763

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374062	1766	3e-22	669 - 727	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	AK249758.1	1754	3e-22	633 - 691	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	AK371466	1960	3e-22	682 - 740	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	MLOC_19196.7	1115	3e-22	308 - 366	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	MLOC_19196.4	1328	3e-22	328 - 386	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	MLOC_19196.13	1530	3e-22	306 - 364	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	MLOC_19196.11	1076	3e-22	240 - 298	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	MLOC_19196.5	1420	3e-22	246 - 304	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	MLOC_19196.9	1293	3e-22	236 - 294	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	MLOC_19196.8	1530	3e-22	261 - 319	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	MLOC_19196.15	1542	3e-22	262 - 320	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	MLOC_19196.6	1320	3e-22	246 - 304	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	MLOC_19196.2	1383	3e-22	246 - 304	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	MLOC_19196.3	1580	3e-22	250 - 308	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	MLOC_19196.14	1568	3e-22	300 - 358	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	MLOC_19196.10	1481	3e-22	289 - 347	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	MLOC_19196.1	1149	3e-22	250 - 308	98	59 / 60	plus	ABC15789 ABC18549 ABC19664
MLOC	MLOC_19196.12	1903	3e-21	599 - 658	97	59 / 61	plus	ABC15789 ABC18549 ABC19664
JLOC1	JLOC1_13318.10	1388	1e-22	217 - 275	98	59 / 60	plus
JLOC1	JLOC1_13318.9	1405	1e-22	231 - 289	98	59 / 60	plus
JLOC1	JLOC1_13318.8	1473	1e-22	299 - 357	98	59 / 60	plus
JLOC1	JLOC1_13318.7	1604	1e-22	240 - 298	98	59 / 60	plus
JLOC1	JLOC1_13318.6	1364	1e-22	193 - 251	98	59 / 60	plus
JLOC1	JLOC1_13318.5	1410	1e-22	239 - 297	98	59 / 60	plus
JLOC1	JLOC1_13318.4	1417	1e-22	243 - 301	98	59 / 60	plus
JLOC1	JLOC1_13318.3	1478	1e-22	304 - 362	98	59 / 60	plus
JLOC1	JLOC1_13318.2	1482	1e-22	308 - 366	98	59 / 60	plus
JLOC1	JLOC1_13318.1	1420	1e-22	246 - 304	98	59 / 60	plus
Harvest21	ABC47325	469	3e-25	378 - 437	100	60 / 60	plus
Harvest21	ABC17734	699	5e-23	440 - 498	98	59 / 60	plus
Harvest35	U35_46784	469	3e-25	378 - 437	100	60 / 60	plus
Harvest35	U35_22707	855	5e-23	596 - 654	98	59 / 60	plus
Harvest35	U35_9707	766	5e-23	571 - 629	98	59 / 60	plus

Contig Sequence (469 bp)

>U35_46784 469 Hv_44K_v2
CCAGGCACGCCGGCGATGGCTCATAACTCCGCGTTACATCGGCCGCCTCCTCCTCGTCTC
CGCCGCCGCGGCCTTCATCTACATCCAAGTGCGGCTCTTCTCTACCCAGTCTCATGACGC
CGGACGCCTCGCCCTCGCCGGAGCAGATCAACCTGATCTCCCCGTCGCCGCTGTTGTCAT
AATGGCTTGCAATCGACCAGACTATTTGCAGAGGACAGTTGAATCTATCCTCAAGTACCA
GAAAGCAGTTGCTTCAAAGTTCCCACTATTTATATCGCACGATGGAACAAATGGAGATGT
AAAAAATAAGGCCCTGAGTTATACCCAAATAAGATATATGCAGACCACTATAAATGGGCC
CTGGATGAGCTATTCATTAAGCATGATTTTCGCCGAGTTATCATTCTGGAAGATGACATG
GAGATCGCCCCCAGATTTCTTCGACTACTTCGAGGCTGCAGCGAAATTA

Homology of Contig U35_46784 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None