barSeed - Barley Seed Development Database

Probe ABC18053

Source Contig ABC18053

barSeed

Links

Affymetrix Source Sequence (809 bp)

>ABC18053 809
GTTGCATCGTACGGTTGGTTTCAATCATTCTTACATATGCGATCCCCATGTGCAGGCCGT
GTTCTCTGTCAACTTGACTTGTTAAGCTATCCGAAGGAGGACAGCCATGGCTACCATCTA
TGACATTGGCCTCGGGGCGGGGTTCAACATATTGATGGCGACCATCTTCCTGCTCATATT
CGCTTTCCTACGGCTACAGCCCATCAACGACAGGATCTTCTTCCCGAAATGGTACCTCAA
GGGAATGCGGGACAGCCCGTCCTCCGCCGGCGCCGCTGTCACCAAGTATGTCAACCTGAA
CGTGAGGTCCTACTTGAAGTTCTTAAGCTGGATGCCGGCTGCTCTCAAGATGCCCGAGGA
GGAGTTGATCGAGCATGCGGGCCTCGATTCCGTTGTCTATCTACGGATATACCTCACAGG
ACTGAAGATATTTGTTCCGATTACGATTCTTGCTTTCGCTGTTTTGGTCCCTGTGAACTG
GACCAATGATACGCTAGAAGGTTTGAAGGTAGTCCACAGTGATATTGACAAACTTTCAAT
CTCCAACATACCTTATGGATCTAAGAGGTTTATTGCTCACTTGGTTATGGCCTATGTATT
TACATTTTGGACCTGCTATGTACTTAAGAATGAGTATGAAAGAGTCGCGACTATGAGGTT
GCGCTTTCTTGCTTCAGAGAAACGCCGACCGGATCAGTTCACTGTTCTTGTACGGAACAT
ACCACCAGACCCTGATGAATCAGTTAGCGAGCTTGTGGAACATTTCTTCCTTGTCAATCA
TCCTGATCATTATCTGAAACATCAGGTAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK250130.1	3143	0.0	331 - 1083	99	750 / 753	CUST_19357_PI390587928 CUST_11080_PI390587928	ABC09725 ABC18053 ABC18094
MLOC_60098.1	1036	0.0	5 - 521	99	515 / 517	None	ABC18053
AK376298	2656	0.0	322 - 1042	87	630 / 721	CUST_4026_PI390587928	ABC09725 ABC18053
MLOC_73142.1	755	4e-142	1 - 482	86	414 / 482	None	ABC18053
MLOC_73142.2	820	5e-141	1 - 480	86	412 / 480	None	ABC18053
MLOC_52397.2	2613	3e-123	2046 - 2285	100	240 / 240	CUST_19357_PI390587928 CUST_11080_PI390587928	ABC09725 ABC18053 ABC18094
MLOC_57666.1	2115	1e-86	235 - 477	91	220 / 243	None	ABC09725 ABC18053