barSeed - Barley Seed Development Database

Probe CUST_11080_PI390587928

Source Contig U35_7665

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11080_PI390587928	Hv_44K_v2	GCGAGCTTGTGGAACATTTCTTCCTTGTCAATCATCCTGATCATTATCTGAAACATCAGG	1000	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.842	1.770	1.054	0.641	0.781	1.043
Raw	104.948	147.425	81.517	71.944	32.047	49.174

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250130.1	3143	6e-24	1025 - 1083	100	59 / 59	plus	ABC09725 ABC18053 ABC18094
MLOC	MLOC_52397.1	2421	6e-24	2171 - 2229	100	59 / 59	minus	ABC09725 ABC18094
MLOC	MLOC_52397.2	2613	6e-24	2046 - 2104	100	59 / 59	minus	ABC09725 ABC18053 ABC18094
JLOC1	JLOC1_33578.1	2912	3e-24	508 - 566	100	59 / 59	plus
Harvest21	ABC18053	809	3e-25	747 - 806	100	60 / 60	plus	ABC18053
Harvest35	U35_7665	1063	3e-25	1001 - 1060	100	60 / 60	plus

Contig Sequence (1063 bp)

>U35_7665 1063 Hv_44K_v2
GACCGTTGAGCTCCGGACTCCATCCATATCTCTTCTTCCTCCCTTTCCCTTTTAAAACGG
AAGCAGAGCTCCCCCCGTCCCGTCCAGATACTGTTACCAGCACAAGGAAGGAAGGAAGGA
GTTGGAGAGGGGAGGGCGTCCAATCCGGGCTGCCCCGCCGCCACGCCGCGCTTGCCCGGA
CACCAATCCAGGAAGCAAGCAATCAAGCAAGCAGGGGAGGACTGTTACCCCCCACCCTGG
GCGAGGCCACCTCCCCCCACCAGGAGGAAGGAACACGCCGCCGCCGCCGACCGGAGACCG
ACAGCCCAGGCCGTGTTCTCTGTCAACTTGACTTGTTAAGCTATCCGAAGGAGGACAGCC
ATGGCTACCATCTATGACATTGGCCTCGGGGCGGGGTTCAACATATTGATGGCGACCATC
TTCCTGCTCATATTCGCTTTCCTACGGCTACAGCCCATCAACGACAGGATCTTCTTCCCG
AAATGGTACCTCAAGGGAATGCGGGACAGCCCGTCCTCCGCCGGCGCCGCTGTCACCAAG
TATGTCAACCTGAACGTGAGGTCCTACTTGAAGTTCTTAAGCTGGATGCCGGCTGCTCTC
AAGATGCCCGAGGAGGAGTTGATCGAGCATGCGGGCCTCGATTCCGTTGTCTATCTACGG
ATATACCTCACAGGACTGAAGATATTTGTTCCGATTACGATTCTTGCTTTCGCTGTTTTG
GTCCCTGTGAACTGGACCAATGATACGCTAGAAGGTTTGAAGGTAGTCCACAGTGATATT
GACAAACTTTCAATCTCCAACATACCTTATGGATCTAAGAGGTTTATTGCTCACTTGGTT
ATGGCCTATGTATTTACATTTTGGACCTGCTATGTACTTAAGAATGAGTATGAAAGAGTC
GCGACTATGAGGTTGCGCTTTCTTGCTTCAGAGAAACGCCGACCGGATCAGTTCACTGTT
CTTGTACGGAACATACCACCAGACCCTGATGAATCAGTTAGCGAGCTTGTGGAACATTTC
TTCCTTGTCAATCATCCTGATCATTATCTGAAACATCAGGTAA

Homology of Contig U35_7665 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g51630.2	767	9e-133	protein\|early-responsive to dehydration protein-related, putative, expressed
Brachypodium v1_2	Bradi2g39230.1	769	2e-139
Arabidopsis v10	AT4G04340.2	772	1e-114	ERD (early-responsive to dehydration stress) family protein \| chr4:2123235-2126624 FORWARD LENGTH=772