barSeed - Barley Seed Development Database

Probe ABC17832

Source Contig ABC17832

barSeed

Links

Affymetrix Source Sequence (1142 bp)

>ABC17832 1142
GTTGCAGTGACTTAAACGCAGGTAAGATACTATCAAACATTTTCTCTTCCATTCCCATTT
ATTATAAGGGCACTTTGGAAGTGAATACAATAATTATATCTTCAACCTAGAAACATTCCC
AGTAATTATATGTTGTCCTATGAAAGTGTGTATACAATCATCACATATCCAATCTAGGAA
TACGGTATACAAAGTATTCCTAGGCATTAATACATGGCATCTCCAGTCTAGGAACATGGC
GTACAAAGTATTCTAGGGCGCTAATACATGGTATATGATAGATAAGTCATTTTGTTTTAG
CGTATTTATCATTGTTGCATGTGTCATTTTTATCCGAGAACTATTTAGGTGTAATTAAAT
AAAGTGAGTTAGTATCTCGTTCCCTATTTCAGGTATCAAATTTTCCTTCACTACCGGTGC
TACCCTGTAGTAATTTGGCTAAAGGTTCCAAAATTGGCATGTCAGGCTGCCTCTCTAACA
TGTTCAAAACTTATTTTTTAATATAAGCTTGTTTATAACTTTGTCTTGAAATCTCTAAGC
ATGGTCGATACACTTATGTTTACATTTTAAAGTTCTTCCTAAACCCTTCATCCCCGCTGA
GGCATGGGTTGACGTGAAGCATGAGGCAAATTTGATTGCTCTTTAATAATACAGATTACT
TAGTGTGGGTTGCAAGGATATATCACAAGTCCTCCTTGATTACATATATTAATGTTTCCC
CTTCACGTGTATCATGTCTTGTAGCAAACAACAAGAGCTCTGTAACAATTCTTTGCAGTT
GGAAGAAATGCACACACAAGAAAGAAGGTATTGCAAGCGAGGTGCGCATATGAAGATTGG
ACAGAGAAGTAGTGAAGAAAGATGAGCACAATTTTTTCTTCAAAAAGAAGAAGATGGAGA
CTATCATCAAACTTTTACCTATTTGTGTTTCTGGTGGGATGTACATGCGGAGAAATGGAA
ATAGTCGTATCCAAGAATGGAGCAAAGTGGGAGAAATACATCGGAGTGTGTGAACATTTT
TTTTATAGAAAGACCAATTGGTTCAATACTTGGTCCCGAAACTTCACTCTATGATTTTGT
AAATAAATGACATGGCATCCAATTAAGAGCAGTCTTGCTTTGTTTAAAAAAAAAAAAAAA
AA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_23150.1	505	0.0	1 - 505	99	504 / 505	CUST_14049_PI390587928	ABC17832
MLOC_2866.1	787	5e-162	478 - 787	100	310 / 310	None	ABC17832
MLOC_51953.1	317	3e-144	1 - 317	96	305 / 318	None	ABC17832
MLOC_76591.1	329	9e-135	1 - 329	93	308 / 331	None	ABC17832
MLOC_29269.1	200	3e-70	46 - 200	98	152 / 155	None	ABC17832
AK251744.1	4301	4e-58	4006 - 4158	94	144 / 154	CUST_17136_PI390587928	ABC13698 ABC17832 ABC43092
MLOC_28605.1	1262	4e-54	715 - 865	92	142 / 154	CUST_17136_PI390587928	ABC17832 ABC43092