barSeed - Barley Seed Development Database

Probe CUST_14049_PI390587928

Source Contig U35_8661

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14049_PI390587928	Hv_44K_v2	CCGAAACTTCACTCTATGATTTTGTAAATAAATGACATGGCATCCAATTAAGAGCAGTCT	1055	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.420	1.069	1.198	0.868	0.237	0.265
Raw	63.630	72.320	75.285	85.371	8.030	10.122

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23150.1	505	2e-24	429 - 488	100	60 / 60	plus	ABC17832
JLOC1	JLOC1_16004.1	510	8e-25	428 - 487	100	60 / 60	plus
Harvest21	ABC17832	1142	3e-25	28 - 87	100	60 / 60	minus	ABC17832
Harvest35	U35_8661	1142	3e-25	1056 - 1115	100	60 / 60	plus

Contig Sequence (1142 bp)

>U35_8661 1142 Hv_44K_v2
GTTGCAGTGACTTAAACGCAGGTAAGATACTATCAAACATTTTCTCTTCCATTCCCATTT
ATTATAAGGGCACTTTGGAAGTGAATACAATAATTATATCTTCAACCTAGAAACATTCCC
AGTAATTATATGTTGTCCTATGAAAGTGTGTATACAATCATCACATATCCAATCTAGGAA
TACGGTATACAAAGTATTCCTAGGCATTAATACATGGCATCTCCAGTCTAGGAACATGGC
GTACAAAGTATTCTAGGGCGCTAATACATGGTATATGATAGATAAGTCATTTTGTTTTAG
CGTATTTATCATTGTTGCATGTGTCATTTTTATCCGAGAACTATTTAGGTGTAATTAAAT
AAAGTGAGTTAGTATCTCGTTCCCTATTTCAGGTATCAAATTTTCCTTCACTACCGGTGC
TACCCTGTAGTAATTTGGCTAAAGGTTCCAAAATTGGCATGTCAGGCTGCCTCTCTAACA
TGTTCAAAACTTATTTTTTAATATAAGCTTGTTTATAACTTTGTCTTGAAATCTCTAAGC
ATGGTCGATACACTTATGTTTACATTTTAAAGTTCTTCCTAAACCCTTCATCCCCGCTGA
GGCATGGGTTGACGTGAAGCATGAGGCAAATTTGATTGCTCTTTAATAATACAGATTACT
TAGTGTGGGTTGCAAGGATATATCACAAGTCCTCCTTGATTACATATATTAATGTTTCCC
CTTCACGTGTATCATGTCTTGTAGCAAACAACAAGAGCTCTGTAACAATTCTTTGCAGTT
GGAAGAAATGCACACACAAGAAAGAAGGTATTGCAAGCGAGGTGCGCATATGAAGATTGG
ACAGAGAAGTAGTGAAGAAAGATGAGCACAATTTTTTCTTCAAAAAGAAGAAGATGGAGA
CTATCATCAAACTTTTACCTATTTGTGTTTCTGGTGGGATGTACATGCGGAGAAATGGAA
ATAGTCGTATCCAAGAATGGAGCAAAGTGGGAGAAATACATCGGAGTGTGTGAACATTTT
TTTTATAGAAAGACCAATTGGTTCAATACTTGGTCCCGAAACTTCACTCTATGATTTTGT
AAATAAATGACATGGCATCCAATTAAGAGCAGTCTTGCTTTGTTTAAAAAAAAAAAAAAA
AA

Homology of Contig U35_8661 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None