barSeed - Barley Seed Development Database

Probe ABC13698

Source Contig ABC13698

barSeed

Links

Affymetrix Source Sequence (1460 bp)

>ABC13698 1460
AATTCCCCTCGCTGCCGCCGCGAATCCCCTCTCTTCTCCTCTCTCTCCTCCACTCGCCGC
CGTCTCCGACAGCAAGAAGAGTCGCCGGCGGAAAGCCTTGGCGGCTCGGGTTCCGGCGGC
CGCCGCCACGATGAAGCTCGTCCACCGCAATCTCGCCCGCAACGGGCCCGGCTCCGCCAA
GCTGCTGCCGGAGGAGGAGGACGACCTGTGGCACGCGTACAATCTCATCGCCGTCGGGGA
CAGCCTCCAGGCCGTCACTGTCCGGAAAGTTCTCAGGGATTCTGCTTCTGGTGGGCGTGA
TGCGGAGCGCGTGAAGCTCAAGTTGGAAATTGTAGTTGAGTCTGTAGATTATGACAAGGA
GGGGAATGTTTTGCGAGTGCGTGGCAAAAATATTACTGAGAATGATCACGTGAAGATTGG
CCAGTTTCATACTTTAGAACTTGAGCTGAAGAGACCTTTTGTTCTACGAAAGGAATATTG
GGATTGGTTAGCACTTGATACCATCCAACAAGCATGTGATCCTACTGCAAGTGCTGATCT
AGCAGTTATTCTTATGCAAGAAGGACTTGCCCACTTATTCCTTATTGGGAGAAGCATAAC
AGCAACAAGGTCACGCATTGAAACATCGATCCCTAGGAAACATGGACCTGCCATTGCTGG
TTACGAATCGGCTCTCAAGAAGTTCTTTGAGCATGTTTTACAAGCTTTGCTGAAGCACAT
TGATTTCGAAGTGGTCCAATGTGTTGTAATTGCAAGCCCAGGTTTTACTAAGGATCAGTT
TCGTGATTACATGCATCTTGAAGCTGCACGGCGAGACTTGAGAGTAATAATTGAGAATAA
ATCACGCATTATTCTTGCACATGCACCTTCAGGCTACAAGCATAGTTTGAAGGAAGTTTT
GGACACCCCAGGTGTGATGTCACTGATAAAAGATACAAAAGCGGCACAGGAGGTGCAAGC
TTTGAAAGAGTTCTTCGCTATGCTTACTAATGACTCAGCCCGAGCGTGTTATGGACCTAA
GCATGTTGAGGTCGCACATGAGCGCCTTGCAATACAAACTCTTCTGATGACAGATACTTT
GTTTCGGAACACGGACATCGTTAGCAGGAGAAAGTATGTGAACTTGGTTGAGTCAGTCAA
GAAATATGGTGGTACAGTGCACATATTTTCTTCGATGCATGTCTCCGGCGACCAATTGGC
GCAGTTGACAGGAATAGCAGCTATACTTCGATTCCCCCTGCCAGATTTGGAGGACATCGA
GATGTGATTAGTCCAGTCCCTCCGGAGCTGCCTAACATTTTTCGTACCAACCTGTTAACT
TATAGCTGATCAAGTGTGATAATATAACAGTTTGGCTCAAAGAAATTCTGACAACATTTT
AATGTATCCTTGTTGTATTTTCTTTTGAGAAGATATCTTTATTGTAAATGGTTAGTTATG
CCACATCTATTGGTTATTTT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK372252	1498	0.0	11 - 1461	99	1451 / 1460	None	ABC13698
AK251959.1	2167	5e-138	1846 - 2112	100	267 / 267	CUST_3682_PI390587928	ABC13698
AK365957	1949	0.0	1218 - 1798	100	581 / 581	CUST_3682_PI390587928	ABC13698
MLOC_5075.1	727	0.0	5 - 594	99	587 / 590	None	ABC13698
MLOC_5075.4	666	0.0	4 - 593	99	587 / 590	None	ABC13698
MLOC_5075.8	909	0.0	3 - 592	99	587 / 590	None	ABC13698 ABC43092
MLOC_5075.9	975	1e-50	708 - 823	98	114 / 116	None	ABC13698
MLOC_5075.11	1140	1e-50	708 - 823	98	114 / 116	None	ABC13698 ABC43092
MLOC_5075.3	729	1e-50	541 - 656	98	114 / 116	None	ABC13698
MLOC_5075.2	807	1e-50	620 - 735	98	114 / 116	None	ABC13698
MLOC_5075.6	828	1e-50	541 - 656	98	114 / 116	None	ABC13698
MLOC_5075.5	869	1e-50	620 - 735	98	114 / 116	None	ABC13698
MLOC_5075.7	1041	1e-50	620 - 735	98	114 / 116	None	ABC13698 ABC43092
MLOC_5075.10	972	1e-50	540 - 655	98	114 / 116	None	ABC13698 ABC43092
MLOC_54416.1	541	0.0	1 - 421	99	419 / 421	None	ABC13698
MLOC_50050.1	809	0.0	416 - 790	99	374 / 375	None	ABC13698
MLOC_5075.12	306	5e-113	3 - 230	99	226 / 228	None	ABC13698
AK251744.1	4301	1e-50	1675 - 1790	98	114 / 116	CUST_17136_PI390587928	ABC13698 ABC17832 ABC43092