barSeed - Barley Seed Development Database

Probe ABC14337

Source Contig ABC14337

barSeed

Links

Affymetrix Source Sequence (1286 bp)

>ABC14337 1286
GGCCGACCGCCATTGCCTCCGTCCATCCACGCTGCTTGCCCAGCCCAGCTCATCATCCCG
GAGCGGAATCAACTGATCGAATGGGACGCCCGTCGTCCGGCGCCGTGGGGCAGCCCAAGG
TCCGCAAGGGACTGTGGTCGCCCGAGGAGGACGAGAAGCTCTACAACCACATCATCCGGC
ACGGCGTCGGCTGCTGGAGCTCCGTCCCCAGGCTCGCCGCGCTGAACCGCTGCGGCAAGA
GCTGCCGCCTCCGGTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCTGCTTCTCCC
AGCAGGAGGAGGACCACATCGTCGCGCTCCACCAGATCCTCGGCAACAGGTGGTCTCAGA
TCGCGTCGCACCTGCCGGGCCGGACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCA
TCAAGAAGAAGCTCCGGCAGCAGGGCATCGACCCGGCCACGCACAAGCCCATGGCCTCCG
CGGACACGGCAACGGCAGCGGCCGCATTGCCGGACGCAGAAGAGGAAGACCGTAAGCCCC
TTTGCCCGGAGATCGACGGCAGCCTCGTTCCGAAGCAGCCGGCGGTGTTCGACCCGTTCC
CGCTGTGCGTCGACTACGGCGCCGGGTTCGCCGAGGAACTCGGCGTGGCGAACGCTGCGG
CATTGTATGGCCAGCTCTGCGGCGGGAAGGAGGTCGCGGACGACGACGCCGGGTTCGGCG
CCGCGGACTACAGCTGCGTGCTGGACGTGTCGGAGAACCTGGGCTACGGGGAGAGCTCGA
GCAACAGCAGCAACTGGAACTACGGCGGCGAGGTGGGCAGCGTGCTGGACGGCGAGGTGC
CGCACTGGGCCAAGCCGGAGCCGGCCTTCGCGGAGATGGAGAGGCAGCAGCAGCACTCAC
CGGCGGAGCAGAAGCTTTCGCTGCCCTGCCAAGAACAGAGCCTCCTCGCAAGTTTCGATT
TCAACCTGGAATTGGAACCATACTTCTGAAATTCCCCCCTCTTTTTTCCCTTCATTTTTC
ACCTTCTTGAATCATATCACGATTTCCAACCACGTATATTCACACGTCAACAGGATGGCA
AGGAACCATCCGAAAGCCAATTAGGGATTGTACGTAGAGTACAAACAAAGACACACGCTT
GTTTGATTTTTCACAGAGACGACAATACGGTAAGTATGTCGTGGAACATTGTTGTGTAGG
CGCTGCTTAGTCACGGAGACGACATATAGCAATCAAACACTTGTAAAAAATAAGCACAAA
CATTTATATACATACTGGAGTATTAC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_76777.2	1543	0.0	1 - 1238	99	1235 / 1238	None	ABC09250 ABC09252 ABC14337 ABC53019
MLOC_76777.1	956	0.0	9 - 948	99	937 / 940	CUST_15145_PI390587928	ABC14337
MLOC_76777.3	1186	0.0	15 - 364	100	350 / 350	None	ABC14337
MLOC_23453.1	1242	0.0	55 - 611	88	500 / 567	CUST_15146_PI390587928	ABC09252 ABC14337
AK371164	1065	1e-63	735 - 876	98	139 / 142	CUST_15146_PI390587928	ABC09252 ABC14337
MLOC_13293.1	645	2e-136	155 - 645	85	439 / 519	None	ABC14337
AK372534	1162	4e-109	165 - 511	87	303 / 347	CUST_22033_PI390587928 CUST_24040_PI390587928	ABC14337 ABC35495
MLOC_23453.2	1269	5e-78	44 - 333	85	255 / 300	CUST_15146_PI390587928	ABC14337
MLOC_6156.2	1407	6e-102	769 - 1123	86	305 / 356	None	ABC14337
AK358405	1090	1e-58	174 - 459	82	238 / 292	CUST_42_PI390587928 CUST_32622_PI390587928	ABC05842 ABC09250 ABC09252 ABC14337 ABC40938 ABC53019
AK361986	1197	1e-53	199 - 511	79	254 / 320	CUST_25668_PI390587928 CUST_443_PI415269222	ABC09250 ABC09252 ABC14337 ABC53019
AK368728	1134	2e-52	163 - 446	80	233 / 290	CUST_17295_PI390587928	ABC09250 ABC09252 ABC14337 ABC53019
MLOC_66577.1	1624	2e-51	495 - 692	86	171 / 200	None	ABC14337
MLOC_13292.1	783	2e-51	506 - 640	94	127 / 135	CUST_15146_PI390587928	ABC14337
MLOC_13292.2	464	2e-51	179 - 313	94	127 / 135	None	ABC14337
MLOC_71041.1	1597	9e-51	393 - 676	80	232 / 290	CUST_17295_PI390587928	ABC09250 ABC09252 ABC14337 ABC53019