barSeed - Barley Seed Development Database

Probe CUST_32622_PI390587928

Source Contig U35_43821

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32622_PI390587928	Hv_44K_v2	GCTCCACTGATGAAATGGAATGGAATGAAATAATACAGTACTGTCTACCAGTGGTAGATA	16	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.226	1.042	0.796	1.550	0.967	1.328
Raw	3.907	43.574	27.461	84.044	18.671	27.441

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358405	1090	7e-23	1011 - 1070	98	59 / 60	plus	ABC05842 ABC09250 ABC09252 ABC14337 ABC40938 ABC53019
MLOC	MLOC_45692.1	980	7e-23	283 - 342	98	59 / 60	minus	ABC40938
JLOC1	JLOC1_29646.1	819	5e-22	1 - 58	98	57 / 58	minus
Harvest21	ABC40938	574	3e-25	17 - 76	100	60 / 60	minus	ABC40938
Harvest35	U35_43821	574	3e-25	17 - 76	100	60 / 60	minus

Contig Sequence (574 bp)

>U35_43821 574 Hv_44K_v2
TTTTTTTTTTTTTTTTTATCTACCACTGGTAGACAGTACTGTATTATTTCATTCCATTCC
ATTTCATCAGTGGAGCAGTAATAATTTACATGAAACTGAGCAGAGCGAGGAGGGCAGAGA
GGATCTCGCTACAAATCCTCTATCACCTAATAATACCAGTCTCCTCCTCACCTTCTAATA
GGAGTAGGAGTAGTATATCTTTTCCTAAAAGCTAAATAAAAACTTGGTAGGAGGGAGGGA
GCAACAATTTACAGCAGAAAGTTTGATGGAATAATTATTCCCAAATTTCTATTTCATCTC
GAGGCTTCTGAAGTCGAGCATGCCGGCCCTTAGGCCCAAGAAGTTGCTGCTGCAACTGCA
CTCCGTCGCCGCTCCTTTCACTCGTAGGATGCTGCAGCGGAAACAAAGGCCGCCGCCGCC
GCCCTGCAGCTGCTCCATCTTGACCGGCTTCGCGCATGCTCTCGCCGGCGGGCGTTCCTC
AACCTTTTGGAACGGCAGGCTGATGCAAAGGTCCAGGTTGAGGTCCGGGCACCTGGGCGG
GTTGCTCTCCTCCGTCACCGGCTCCGCCTTGGGC

Homology of Contig U35_43821 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None