barSeed - Barley Seed Development Database

Probe ABC14190

Source Contig ABC14190

barSeed

Links

Affymetrix Source Sequence (1133 bp)

>ABC14190 1133
GGCCGCCGTCGCCGTCACCGCCGACCTCCTCCCTTCGCCGGCGCGGCGCCTCCCTCTCCG
TCCTCCTCCTATACAGGTGCTGCTATCTGGCACCACTCTCGCCGACTGGACCTGGCGGCC
TGCCCAAGCTCGACAAGTAGGTTTATTATCCATTGCTTGTTCAAGCTGAGTCATGGAATG
CTTGCAGCAATGAGCACAGCCGTGGATGCTTCATTACCTGTCGCCGAGCAGGAGGATGGT
ACTGCGAATATGTTGGGTGGGAAGAAAGTTGCAGTTGTATTTGTTCTAGGTGGTCCTGGA
AGTGGAAAAGGTACACAATGTAGCAATATTGTGGAGCATTTCGGATTTACACATCTTAGT
GCTGGAGAGCTGTTGCGCTCAGAAATCAAGTCTGGTTCTGAGAATGGAACCATGATTGAC
AGCATTATAAAGGAAGGGAAAATTGTTCCATCTGAGATAACCGTAAAGCTCTTGCAAGAA
GCTATGATAAAAAGTGAAAATAACAAATTCCTCATTGATGGATTTCCAAGGAATCAAGAA
AACCGTCTGTCATTTGAGAATGTTATAAAAATAGCTCCTGAGTTTGTGCTATTCTTTGAC
TGTTCTGAGGAAGAGATGGTAAGACGTCTTCTGGGTCGAAATCAGGGACGAGCTGACGAT
AACATTGAGACTATCAGAAAAAGATTCAGAGTTTTTGAAGAATCAAGTTTGCCTGTAGTT
CAGTACTATGACTCTAAGGGCAAGGTTAAGAAGATTAATGCTGCAAAACCAATCCCTGAG
GTGTTTGAAGATGTGAAAACCATTTTTCAGCCTTATGGCTCAAAGGCCGCATAGATGCGC
TCATGCGAAAAATATGTGGTTCACTAAATTGGTGACCCCAGAAGTACCGAAGGAAAAGGC
TGGAGTTCACGGCGCGCTACGCTGCCAGCATGCCACTAGATAATCATTAATTGTTTGATT
TAAAAGTATTTTGGATATTTGTTAGCAAGTAGAGAGGAACTGGAGCACATATCAGTTTAC
CTGCCATCCCATTTGGTACTATCGTCAAATTATGTAGTCTTTCTGGACATGGTGAAGGAC
ATCTTGTGAGAAAAAAAGGATTGCAATTAATTATTTGGCCTAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_34664.1	2430	0.0	1543 - 2430	100	888 / 888	CUST_22775_PI390587928 CUST_39601_PI390587928	ABC13311 ABC14190 ABC33060
AK249426.1	1126	7e-66	28 - 167	99	139 / 140	CUST_39601_PI390587928 CUST_39600_PI390587928	ABC14190
MLOC_34664.3	2011	2e-66	1874 - 2011	100	138 / 138	CUST_22775_PI390587928 CUST_39601_PI390587928	ABC13311 ABC14190 ABC33060
MLOC_34664.4	931	0.0	47 - 868	99	822 / 825	None	ABC14190
MLOC_34664.2	2384	2e-67	1543 - 1682	100	140 / 140	CUST_22775_PI390587928 CUST_39601_PI390587928	ABC13311 ABC14190 ABC33060
MLOC_34664.5	882	2e-67	39 - 178	100	140 / 140	CUST_39601_PI390587928	ABC14190
MLOC_34665.2	5062	2e-51	3246 - 3356	100	111 / 111	CUST_39600_PI390587928	ABC13311 ABC14190
MLOC_34665.4	3073	2e-56	2581 - 2700	100	120 / 120	None	ABC13311 ABC14190