barSeed - Barley Seed Development Database

Probe ABC13311

Source Contig ABC13311

barSeed

Links

Affymetrix Source Sequence (1555 bp)

>ABC13311 1555
CGTTGTCTTCCTCGGCGGCGCTGCGCCCGCAGAAACGCTGGACTCCGCACTGGTCTGGTG
TGGTCTGGGCGGCCGCTCGCCGGGCGATCGTCTACCCGATCTGACTCCGAAGGGCGCCAC
GCTGACGGCTCCAGCCGCGGCGTCGGCGGGCGCAGGCGGCGGAGGAGATGGCGCACGAGC
GGCGGGGCGCGGCGGCCGCGCACGACGCTGCAGGGGAAGCACTATTTGTTGATGTAGTAC
ATGAAGCCCCTCTATCTGGTCAGCGGCAGCCTCGAAGCATAGTTGGTGGCACTCTGTACT
GTATCTTATTGGCAGGTTATGCTGGTGTTGTCATAGCAGCTCCATGGATATTTGTTCTTA
TACCAGACATGATCCTTCCGTTGCTATGCAGCTGCAATGTTCTGCTTCTAATTATTACAG
GTATATTCCAACAATATTGGGTCCATCAGGTCACAAAAGTGCGACTACAGGGCTACTATG
ATTTAAGCCAAAAACTGAAGCGCATTGCTCGAGTTCCATTTGCCGCTATTGCTTGCGGTA
CTGCCCTAATGCTCTTAATTCTAGCTTGGCAACCTCAAGTAGAAGTATTTTCAATTTCAC
TTTTGCTCAGGATCGCACTAGTTGTTGAAGTGATATCCGCTGGATGTTTCATGAGCTTAT
ACATAGGGCACATCCATAAATACAACTCTTTGAATGAGCAGCCTGACATTCTACGGCCAC
TTTATTCTGCACTGCAACCATCTAGTTCGTTGGAAGAGATAAGGTACTATGATTCTCGTC
TGTCTGATCAACAAATGGCACTGCTCCAGTACCAGAGGGAGAATATTCATTATCTGAGTG
AAGAGGTGCTTAGGTTGCAGGAAAGCTTAAGTAAGTACCATAGAAGTGTTGCTGCAAGCA
CTCCTCAGGTTGATCTTACTCATCTTTTGGCATCTCGTGATCAAGAACTTCGTGCACTAT
CTGCTGAGATGAATCAAGTGCATTCAGAGCTTCGTCTTGCTCGTGGTTTGATTGCTGAGA
AGGACTCAGAGATCCAGCACATTCGTGGGAACAACAATCAATATGTCGAAGAAAACGAGA
GACTACGAGCTATCCTTGGTGAATGGAGCACTCGAGCAGCAAAGCTTGAGCGAGCGCTTG
AGGCCGAGAGGGTGTCCAACATGGAACTGCAGAAGAACCGCACAAAGCTCAGACGTCAAT
CAACCAGGGAGAAAATACATGACATTCCTCAATCAGAGAATTCCTCCATAGGTGTGCCTT
AGCTTATGTCCCCGGATTGGGTCTATCAATTGAAACATTATGCCGAGGCAGGTAACTAGG
AGAAGATTGCGGCATCGTGTGAAGATTTGAACGTCCAAAGAAGTGAAGATCAGTACACGG
TTGTACGTTGATGTACAGTACCAAATGAGAGATTAGATTCTGTTACAAAAAGAGAGTAAG
AATGTCTGTTTGTTAGCTGTAAATGAGCACATGTAAATATGTAATGCAGCAATTTGAAGT
ACTCCATGAAACATGAAATCTTGCTCAGTCCTGTTAGAAAAAGAGTTGCACAAGC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK376548	1537	0.0	2 - 1535	99	1533 / 1534	CUST_16623_PI390587928	ABC13311
MLOC_34665.2	5062	0.0	2 - 768	99	766 / 767	CUST_39600_PI390587928	ABC13311 ABC14190
MLOC_34665.4	3073	0.0	1 - 762	99	761 / 766	None	ABC13311 ABC14190
MLOC_66336.3	1027	0.0	1 - 719	100	719 / 719	None	ABC13311
MLOC_66336.1	732	0.0	1 - 671	100	671 / 671	None	ABC13311
MLOC_66336.4	695	0.0	1 - 559	100	559 / 559	None	ABC13311
MLOC_34665.3	694	0.0	1 - 545	100	545 / 545	None	ABC13311 ABC33060
MLOC_66336.2	651	0.0	1 - 514	100	514 / 514	None	ABC13311
MLOC_66336.5	551	0.0	188 - 550	100	363 / 363	None	ABC13311
MLOC_34665.1	355	0.0	5 - 354	100	350 / 350	None	ABC13311
MLOC_34664.1	2430	7e-112	1114 - 1336	99	222 / 223	CUST_22775_PI390587928 CUST_39601_PI390587928	ABC13311 ABC14190 ABC33060
MLOC_34664.3	2011	7e-112	622 - 844	99	222 / 223	CUST_22775_PI390587928 CUST_39601_PI390587928	ABC13311 ABC14190 ABC33060
MLOC_34664.2	2384	7e-112	1114 - 1336	99	222 / 223	CUST_22775_PI390587928 CUST_39601_PI390587928	ABC13311 ABC14190 ABC33060