barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_22775_PI390587928Hv_44K_v2TGTGTGCAAATCACAAACTGTTGGAGTTTGGGACAAGGCATTGTACCTATATGTAAAAAA389GeneList: saddlebrown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.2760.3840.9081.7811.2171.422
Raw 2.8529.63623.30269.65217.11821.780



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_34664.124309e-22620 - 67410055 / 55minus ABC13311 ABC14190 ABC33060
MLOCMLOC_34664.320119e-22128 - 18210055 / 55minus ABC13311 ABC14190 ABC33060
MLOCMLOC_34664.223849e-22620 - 67410055 / 55minus ABC13311 ABC14190 ABC33060
Harvest21ABC330604603e-25390 - 44910060 / 60plusABC33060
Harvest35U35_372904603e-25390 - 44910060 / 60plus



Contig Sequence (460 bp)

>U35_37290 460 Hv_44K_v2
GGCTCGCTCTAATTGTGCTTGCGGCGGAGGAATTCCATGAGATCCGCCCCCCGTAGTCGC
GCCATGGTGCTTGTAGGACATGCCAGATCCCTGATCTGATCTGGTAGCCCCTCTTCGAGG
GTGGAATCATGCCATCATTTGCTCAGAAATCGTGGACAACCAACCCGCCTGTATGCCTCT
GCTGCATGTTTTGCATATGGTTTCCGAAGCTATTTGTGAATTTGGGGAGGAGCTAAGGGC
AGTCCGTATGTAAAATGTCGTGTCATCATTTGGGCACAAGCTTATATACTGCCTTTCCAG
TAGGACTATCTACTGTGATTCTAGTCCAGAAATTAAATGCATCTAGTAGATATTATTGTT
TTGTTCTACTACCGAAATTTTTGATTGCTTGTGTGCAAATCACAAACTGTTGGAGTTTGG
GACAAGGCATTGTACCTATATGTAAAAAAAAAAAAAAAAA



Homology of Contig U35_37290 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None