barSeed - Barley Seed Development Database

Probe ABC13724

Source Contig ABC13724

barSeed

Links

Affymetrix Source Sequence (780 bp)

>ABC13724 780
GGAAGCCTGCAGCCCCGTCTGATCGCTGACCGCCGGCCCCTCTCCGCTCCTGCCGCCGCC
GCCATGGGGAACTTCCGCAAGCTCGGCCGCCACGCCGCCCACCGCGTCTCCATGCTCAGG
ACGATGGTGTCGCAGCTGGTGAAGCACGAGCGGATCGAGACCACAGTCGCCAAGGCGAAG
GAGGTGCGGCGGAAGGCGGATCAGATGGTGCAGCTCGGCAAAGATGGTACCCTAGATGCA
GCAAGACGTGCCTCGGCATTTGTTCGGGGTGATGACGTCGTTCACAAGTTATTCACAGAG
CTTGCATACCGCTACAAGGATCGAGCTGGTGGGTATACAAGACTACTGCGAACCAGGATA
CGAATTGGCGATGCTGCACCAATGGCTTACATTGAGTTTGTCGACCGGGAGAATGAACTT
CGAGAGGCCAAACCTGCGACTCCATCGCCTCCCCAGCGTGTCCCTCTTGATCCGTGGACC
AAGTCCCGTGCTAGCCAACAGTGGGCAGGGCCTAAAGTCAGCCAGAACTCCAAAACAGAA
GGGCTATGAGAACCAAAAGTACCATTTATCTTTATTTTGTGTTTGTGAGATATTTTTTTT
CTCTTTAGACGCGCTAATTAGGAGACCCATTCTGTAACAGACTAAAAACTTATGTTTCCG
CATGATATTTATACTATTTGTCAAGGATCATTGTGACTAGAAATTGTTGCTGATGTGTTA
AGAGTCCATGCTTACTGATCATTGACATGGTTGAGTTTGTCNNAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_62418.2	1770	0.0	1 - 738	100	738 / 738	CUST_12634_PI390587928	ABC11742 ABC12677 ABC13724
MLOC_62418.1	1990	0.0	1 - 738	100	738 / 738	CUST_12634_PI390587928	ABC11742 ABC12677 ABC13724
MLOC_62418.3	2167	0.0	1 - 738	100	738 / 738	CUST_12634_PI390587928	ABC11742 ABC12677 ABC13724
MLOC_62418.4	1790	0.0	1 - 728	100	728 / 728	None	ABC11742 ABC12677 ABC13724
MLOC_62418.5	1682	0.0	1 - 728	100	728 / 728	None	ABC11742 ABC12677 ABC13724
MLOC_62418.7	2227	0.0	1 - 711	100	711 / 711	CUST_12634_PI390587928	ABC11742 ABC12677 ABC13724
MLOC_62418.6	1668	0.0	1 - 711	100	711 / 711	CUST_12634_PI390587928	ABC11742 ABC12677 ABC13724
MLOC_62418.8	1671	0.0	1 - 655	100	655 / 655	None	ABC11742 ABC12677 ABC13724
MLOC_62418.9	2664	0.0	1 - 622	100	622 / 622	CUST_12634_PI390587928	ABC11742 ABC12677 ABC13724
MLOC_65717.1	980	4e-161	113 - 643	86	458 / 532	CUST_11833_PI390587928	ABC11742 ABC13724