barSeed - Barley Seed Development Database

Probe CUST_12634_PI390587928

Source Contig U35_5017

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12634_PI390587928	Hv_44K_v2	GAGGCAACTTACTATACTACTAGCAGATTACTGATCTCTATCGGATTTACTGAATTTGAA	779	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.327	1.430	0.927	1.216	0.803	0.960
Raw	261.902	464.270	248.756	535.202	120.770	158.219

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62418.2	1770	2e-24	1218 - 1277	100	60 / 60	minus	ABC11742 ABC12677 ABC13724
MLOC	MLOC_62418.1	1990	2e-24	1218 - 1277	100	60 / 60	minus	ABC11742 ABC12677 ABC13724
MLOC	MLOC_62418.9	2664	2e-24	1102 - 1161	100	60 / 60	minus	ABC11742 ABC12677 ABC13724
MLOC	MLOC_62418.3	2167	2e-24	1218 - 1277	100	60 / 60	minus	ABC11742 ABC12677 ABC13724
MLOC	MLOC_62418.7	2227	2e-24	1191 - 1250	100	60 / 60	minus	ABC11742 ABC12677 ABC13724
MLOC	MLOC_62418.6	1668	2e-24	1191 - 1250	100	60 / 60	minus	ABC11742 ABC12677 ABC13724
JLOC1	JLOC1_40847.2	1122	8e-25	897 - 956	100	60 / 60	plus
JLOC1	JLOC1_40847.1	2156	8e-25	873 - 932	100	60 / 60	plus
Harvest21	ABC12677	977	3e-25	780 - 839	100	60 / 60	plus	ABC12677
Harvest35	U35_5017	977	3e-25	780 - 839	100	60 / 60	plus

Contig Sequence (977 bp)

>U35_5017 977 Hv_44K_v2
GGAAGCGTCCCGCCGCCGCCTCGGGGGATTCGCCGGCCAGCGGCGAGAGCGAAGCGAGGC
AGCGGCGCCATGGCGCGCCCCTCGCGGCTCTACCTCCTCGCCTACAACTCCCTCCAGGCC
ATCGGATGGTCCGTCGCCTTTCTCCGCCTCCTGGCCTGCCTAGCCCCTCCCGTCTCCGTC
GACTCCGCATACGCCGCCGCCGGCGACCTCATATGCCTTCTGCAAACCTGCGCGGTCCTT
GAGACCATCCATGCCGCCGTCGGATTGGTGCCCACCTCGCCGTTTCTTGCCTTCTTGCAA
TGGGGAGGGAGGACTCACTTCGTTCTTGCCCTTCTCCGGCAAATCCCTGAGGTTCAGGAC
AGCCCATCTGTGTTCATAACGTTTATGGCTTGGAGCATATCTGAGGTTATTCGATACTCT
CACTATGCTCTGAGTACCATAAAAGTTTGTCCAGCATGGCTGACTTACCTCAGGTACACT
GCTTTTATCCCGTTGTATCCTATCGGGGTAGGACCAGGGGAAATGTGGACTATGTACCAA
GCTCTTCCATTTGTAAAGGAGAGGGACCTCTACTCAGGCTTCTTTGCAAAGTTCTCCATG
AGCTACCATTCATTTCTTGTGGGTGTGCTGCTGTGCTATCCGCTTCTATGGCTGAAGCTG
TACCTGCATGTGTTCAAGCAGCGCAAGTCCAAGCTGGGAAAGGCGGACAGGAAGAAACGG
GCATGAGGCAACCAGATTGTTGGGAGGGTCTTGCAGCTGTGGAGTCTTAGCTGAGTTGAG
AGGCAACTTACTATACTACTAGCAGATTACTGATCTCTATCGGATTTACTGAATTTGAAT
GAAGATGCCAAATTTGTTGTAACATATGCATTTTACAAAAATTGAGCAAAGTATGCCAAA
TTTGTAAATGTATGGGGAAAAAAACTTGACCATTTTTATACCTAAAAAGCAAAATCAAAC
AAAAAAAAAAAAAAAAA

Homology of Contig U35_5017 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38590.2	220	4e-122	protein\|expressed protein
Brachypodium v1_2	Bradi2g23200.2	221	3e-129
Arabidopsis v10	AT5G59770.1	272	1e-58	Protein-tyrosine phosphatase-like, PTPLA \| chr5:24079521-24081195 REVERSE LENGTH=272