barSeed - Barley Seed Development Database

Probe ABC13565

Source Contig ABC13565

barSeed

Links

Affymetrix Source Sequence (1207 bp)

>ABC13565 1207
CGCACACCTCCGCTCACTACTGTTCCACACCTCGTCGGTCGTCGCTGTCCTCCACGCGGT
CGCTTGCCATGCTGCTCCGGCCAGATCACGGCCTCCGCGCGCCGCCGGCGCCCGCGCCCG
CCCCTGCCCGGGCCTCCGCCTCCGTCTCCGCGGCGGCGCTCCCCGCCGTCTCCCGCCTCC
CCCGCGGCGCGCTCCGGCTCCCCCGCGCGGCTTCTACACTCAGGGGCAAAGCGTCGAGCG
CCGTGCGGGCGTCGGCTGGCTCCGCGGAGCCAGCGGGCATGCCGTCGCTGGCGCACCGGG
AGGTGGCGCGGGCCGTGGCGGAAGCGGCGGCGGCGCGGCTGGGCGCCCGGCTGCTGCCAT
CGGCCGTGCCCGCCGACGTCGCCGAGTTCCGCAACGGCGACGGGACCGCCCTCGGCTCCC
TGGACGTGCGCCGCGGCGCGCCCGACTCCTCGATTGATTTCATGCTGCAGTCGTCGCTTC
ACTGCAAAGTCCCAAATGGTGCAATCGACATCACGTCTCTTTTCATCAACCTAAATGCCT
CGACGGATGCACCACATTTCATCATGGAGTTCATCCAAGGCAGCCCAACATCAATGGTCG
TGCTTCTGGACCTGCTCCCAAGGAAAGACCTCGCGCTCCATCCAGAGTACATCGAGAAGT
ACTATGAAGATACCGAGGTGGACAAGCAGCGCAAAATCATCGAAGAATTGCCGCAAGCCC
GCCCGTACCTTTCGCCGTCTCTCTTCGTGCGCAGCGCATTTTCTCCGACGGCGGTGTTCT
TCACCATTGACTGTGGGAAAGGAGGGGAGGGCACCTTGGAAGAGATTGTGCATGGTCATC
TTGCGTCAGTTGTGAAGGGGATTCTTCAGATCTGGCTTGATACTTGCGCCAGTGACGCCT
CAGAAATGGAAGAGGGCGAGCGAGAGATCATGGTCAAGAGGGACCGAACTGTAAGATCAA
AATCGATTGAGGTTGACCTGACCGCGAATTTGCCGAGGATGTTTGGCCCCGACGTGTCCG
GACGCATCATCGCTGAAATTCGTAAGGCCTTTGGGGTACAAGAGGCCTAGGATTCAGAAG
TACAAATGTGACTTTAGATTACAAACCAATGGGAATGTAAATAATTATTTGGTGGAAAAC
GTTTCTAATTTGCAGTACATCTTGTCAGACTCGCTGAACTGAATGCTGTGAAAAAAAAAA
AAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_79046.2	821	0.0	1 - 821	99	820 / 821	CUST_16078_PI390587928 CUST_24163_PI390587928	ABC13565
MLOC_79046.3	810	0.0	1 - 810	99	806 / 810	CUST_24163_PI390587928 CUST_16078_PI390587928	ABC13565
MLOC_79046.1	1088	0.0	26 - 765	99	739 / 740	CUST_40895_PI390587928 CUST_24163_PI390587928 CUST_16078_PI390587928	ABC13565
MLOC_77860.1	1441	5e-58	1 - 123	100	123 / 123	CUST_30970_PI390587928	ABC11175 ABC13565
MLOC_77860.2	1438	5e-58	1 - 123	100	123 / 123	CUST_30970_PI390587928	ABC11175 ABC13565
MLOC_77860.4	1441	4e-54	1 - 116	100	116 / 116	CUST_30970_PI390587928	ABC11175 ABC13565
MLOC_77860.3	1084	4e-54	1 - 116	100	116 / 116	None	ABC11175 ABC13565
MLOC_77860.5	1690	4e-54	1 - 116	100	116 / 116	CUST_30970_PI390587928	ABC11175 ABC13565
MLOC_77860.6	1693	4e-54	1 - 116	100	116 / 116	CUST_30970_PI390587928	ABC11175 ABC13565