barSeed - Barley Seed Development Database

Probe CUST_24163_PI390587928

Source Contig U35_32753

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24163_PI390587928	Hv_44K_v2	GGCCTAGGATTCAGAAGTACAAATGTGACTTTAGATTACAAACCAATGGGAATGTAAATA	280	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.883	1.775	0.931	1.178	0.841	0.673
Raw	86.862	132.130	59.499	122.876	29.719	25.523

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79046.1	1088	2e-24	94 - 153	100	60 / 60	minus	ABC13565
MLOC	MLOC_79046.3	810	2e-24	31 - 90	100	60 / 60	minus	ABC13565
MLOC	MLOC_79046.2	821	2e-24	37 - 96	100	60 / 60	minus	ABC13565
JLOC1	JLOC1_52673.1	885	8e-25	726 - 785	100	60 / 60	plus
Harvest21	ABC13565	1207	3e-25	1064 - 1123	100	60 / 60	plus	ABC13565
Harvest35	U35_32753	373	3e-25	281 - 340	100	60 / 60	plus
Harvest35	U35_6544	1207	3e-25	1064 - 1123	100	60 / 60	plus
Harvest35	U35_33169	286	1e-23	194 - 253	98	59 / 60	plus

Contig Sequence (373 bp)

>U35_32753 373 Hv_44K_v2
TTGGGCCCTATAGCCGCATGCTCGAGCGGCCGCTGGATTTAATAGTGCATGGTCATCTTG
CGTCAGTTGTGAAGGGGATTCTTCAGATCTGGCTTGATACTTGCGCCAGTGACGCCTCAG
AAATGGAAGAGGGCGAGCGAGAGATCATGGTTAAGAGGGACCGAACTGTAAGATCAAAAT
CGATTGAGGTTGACCTGACCGCGAATTTGCCGAGGATGTTTGGCCCCGACGTGTCCGGAC
GCATCATCGCTGAAATTCGTAAGGCCTTTGGGGTACAAGAGGCCTAGGATTCAGAAGTAC
AAATGTGACTTTAGATTACAAACCAATGGGAATGTAAATAATTATTTGGTGGAAAACGTT
TCTAATTTGCAGT

Homology of Contig U35_32753 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None