- Probe CUST_16078_PI390587928
- Source Contig U35_33169
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16078_PI390587928 | Hv_44K_v2 | GCCTAGGATTCAGAAGTACAAATGTGACTTTAGATTACAGACCAATGGGAATGTAAATAA | 194 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.032 | 1.704 | 0.921 | 1.305 | 0.787 | 0.678 |
| Raw | 57.691 | 79.110 | 36.435 | 80.995 | 16.606 | 15.794 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_79046.1 | 1088 | 7e-23 | 93 - 152 | 98 | 59 / 60 | minus | ABC13565 |
| MLOC | MLOC_79046.3 | 810 | 7e-23 | 30 - 89 | 98 | 59 / 60 | minus | ABC13565 |
| MLOC | MLOC_79046.2 | 821 | 7e-23 | 36 - 95 | 98 | 59 / 60 | minus | ABC13565 |
| JLOC1 | JLOC1_52673.1 | 885 | 4e-23 | 727 - 786 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC13565 | 1207 | 1e-23 | 1065 - 1124 | 98 | 59 / 60 | plus | ABC13565 |
| Harvest35 | U35_33169 | 286 | 3e-25 | 195 - 254 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32753 | 373 | 1e-23 | 282 - 341 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_6544 | 1207 | 1e-23 | 1065 - 1124 | 98 | 59 / 60 | plus |
Contig Sequence (286 bp)
>U35_33169 286 Hv_44K_v2 TATAGGGCGAATTGGGCCTTCCAGATGATGCTCGAGCGGCCGCTGGCCCGCGAGAGATCA TGGTCAAGAGGGACCGAACTGTAAGATCAAAATCGATTGAGGTTGACCTGACCGCGAATT TGCCGAGGATGTTTGGCCCCGACGTGTCCGGACGCATCATCGCTGAAATTCGTAAGGCCT TTGGGGTACAAGAGGCCTAGGATTCAGAAGTACAAATGTGACTTTAGATTACAGACCAAT GGGAATGTAAATAATTATTTGGTGGAAAACGTTTCTAATTTGCAGT
Homology of Contig U35_33169 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |