barSeed - Barley Seed Development Database

Probe ABC13533

Source Contig ABC13533

barSeed

Links

Affymetrix Source Sequence (712 bp)

>ABC13533 712
ATCAGATCCCTGCTTGTTACTCTGCTGAGCAACCTCCACCACTGCAGCCATTCAATTTTC
CAAAGTTTCACCCCTTGACACTATTCTACATCTTCTACAGTATGCCCAAGGATGTTGCTC
AGTTATATGCCGCGAATGAACTGTATAACAAAGGGTGGTTTTACCACAGAGAGTATCGTG
TTTGGCTCACACGAGCTTCAAATGTGGCACCTCTTGTGAAAACTCCACTGTATGAACGAG
GATCCTACATTTGCTTTGATCCCAACCTGTGGGATACAATTCAGAAGGACAACTTTGTTC
TCCAATATGAATCTGTAGAGAAGAGACCTGTCCTCCCTTCCGCCAGCCAAAATGTTAGAT
TATAAGCTGTTGTACTTCTGTATTAGAGAATGTCGATTTTCTTCATCCGGATCAGTACCT
GTTATTATCATAGGATATAGGTGGCGTACATTTGTGCAAAATGATTCTGACTTGTGTGCT
GTTCCGAAGAAGGAGCTTCTCTGTGTTGGCTGGCAGACCTGATGGTAGTAGCTTTAGACA
TGTAGCCGAGGAAAACACGCCTCGTAATTCGTTGGCTGTAAACCTTTAGCGTCAATTTGG
TATCATTGGCTGTAATTGACTTGAGTTTCTTAGCTTTCGTAAAATTCAGACATGTACTCT
TTAACTATGAGTTTAATTATCGGTATTTTGGGTTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_11260.15	2111	0.0	1409 - 2104	100	696 / 696	CUST_25490_PI390587928 CUST_9359_PI390587928	ABC13533
MLOC_11260.9	2805	0.0	2109 - 2804	100	696 / 696	CUST_25490_PI390587928 CUST_9359_PI390587928	ABC13533
MLOC_11260.10	2928	0.0	2232 - 2927	100	696 / 696	CUST_25490_PI390587928 CUST_9359_PI390587928	ABC13533
MLOC_11260.8	3243	0.0	2551 - 3243	100	693 / 693	CUST_9359_PI390587928 CUST_25490_PI390587928	ABC13533
MLOC_11260.16	1236	0.0	545 - 1236	100	692 / 692	CUST_9359_PI390587928 CUST_25490_PI390587928	ABC13533
MLOC_11260.4	3418	0.0	2764 - 3418	99	654 / 655	CUST_9359_PI390587928 CUST_25490_PI390587928	ABC13533
MLOC_11260.1	4225	0.0	3653 - 4225	100	573 / 573	CUST_25490_PI390587928	ABC13533
MLOC_11260.5	3191	0.0	2647 - 3191	99	543 / 545	CUST_25490_PI390587928	ABC13533
MLOC_11260.7	3275	1e-171	2949 - 3275	100	327 / 327	CUST_9358_PI390587928 CUST_9359_PI390587928 CUST_25490_PI390587928	ABC13533
MLOC_11260.2	4134	6e-105	3928 - 4134	100	207 / 207	CUST_25490_PI390587928 CUST_9358_PI390587928	ABC13533
MLOC_11260.13	2278	3e-92	2095 - 2278	100	184 / 184	CUST_25490_PI390587928 CUST_9358_PI390587928	ABC13533
MLOC_11260.14	2302	2e-173	1966 - 2295	100	330 / 330	CUST_9359_PI390587928 CUST_25490_PI390587928 CUST_9358_PI390587928	ABC13533
MLOC_11260.6	3098	3e-88	2922 - 3098	100	177 / 177	CUST_25490_PI390587928 CUST_9358_PI390587928	ABC13533
MLOC_11260.11	2960	2e-173	2630 - 2959	100	330 / 330	CUST_9358_PI390587928 CUST_25490_PI390587928 CUST_9359_PI390587928	ABC13533
MLOC_11260.3	4258	6e-105	4052 - 4258	100	207 / 207	CUST_25490_PI390587928 CUST_9358_PI390587928	ABC13533
MLOC_11260.12	2193	3e-92	2010 - 2193	100	184 / 184	CUST_25490_PI390587928 CUST_9358_PI390587928	ABC13533