- Probe CUST_9358_PI390587928
- Source Contig U35_20657
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9358_PI390587928 | Hv_44K_v2 | TATAAGGTCAGCAGTTGGATTCCCCGCCTCCCATTCATCTGTTGTACTTCTGTATTAGAG | 395 | GeneList: white MasterList: Aleurone_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.174 | 1.255 | 1.498 | 1.206 | 0.439 | 0.351 |
| Raw | 812.716 | 1391.637 | 1410.577 | 1820.375 | 230.539 | 199.705 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11260.7 | 3275 | 2e-24 | 2911 - 2970 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.2 | 4134 | 2e-24 | 3890 - 3949 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.3 | 4258 | 2e-24 | 4014 - 4073 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.12 | 2193 | 2e-24 | 1972 - 2031 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.13 | 2278 | 2e-24 | 2057 - 2116 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.14 | 2302 | 2e-24 | 1928 - 1987 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.6 | 3098 | 2e-24 | 2884 - 2943 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.11 | 2960 | 2e-24 | 2592 - 2651 | 100 | 60 / 60 | plus | ABC13533 |
| JLOC1 | JLOC1_7442.6 | 2300 | 8e-25 | 1892 - 1951 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7442.3 | 2455 | 8e-25 | 2047 - 2106 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7442.1 | 2209 | 8e-25 | 1801 - 1860 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC13534 | 599 | 3e-25 | 396 - 455 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_20657 | 601 | 3e-25 | 396 - 455 | 100 | 60 / 60 | plus |
Contig Sequence (601 bp)
>U35_20657 601 Hv_44K_v2 ATGGTCAACTGAGCCAGCTAAAGGAGAACCTGATTATCAGATCCCTGCTTGTTACTCTGC TGAGCAACCTCCACCACTGCAGCCATTCAATTTTCCAAAGTTTCACCCCTTGACACTATT CTACATCTTCTACAGTATGCCCAAGGATGTTGCTCAGTTATATGCCGCGAATGAACTGTA TAACAAAGGGTGGTTTTACCACAGAGAGTATCGTGTTTGGCTCACACGAGCTTCAAATGT GGCACCTCTTGTGAAAACTCCACTGTATGAACGAGGATCCTACATTTGCTTTGATCCCAA CCTGTGGGATACAATTCAGAAGGACAACTTTGTTCTCCAATATGAATCTGTAGAGAAGAG ACCTGTCCTCCCTTCCGCCAGCCAAAATGTTAGATTATAAGGTCAGCAGTTGGATTCCCC GCCTCCCATTCATCTGTTGTACTTCTGTATTAGAGAATGTCGATTTTCTTCATCCGGATC AGTACCTGTTATTATCATAGGATATAGGTGGCGTACATTTGTGCAAAATGATTCTGACTT GTGTGCTGTTCCGAAGAAGAGCTTCTCTGTGTTGGCTGGCAGACCTGATGGTAGTAGCTT T
Homology of Contig U35_20657 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g54120.4 | 623 | 1e-63 | protein|CCR4-NOT transcription factor, putative, expressed |
| Brachypodium v1_2 | Bradi2g21970.3 | 572 | 2e-79 | |
| Arabidopsis v10 | None |