- Probe CUST_25490_PI390587928
- Source Contig U35_19841
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25490_PI390587928 | Hv_44K_v2 | AAGTCCGTCTTCTAATTCGGGGTCTTATGAGCAACTCATCCAGCAATACCATCAACCTCA | 1191 | GeneList: darkorange2 MasterList: Aleurone_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.141 | 0.972 | 1.423 | 1.332 | 0.488 | 0.409 |
| Raw | 246.798 | 301.356 | 422.735 | 646.282 | 81.055 | 74.131 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11260.7 | 3275 | 2e-24 | 2219 - 2278 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.1 | 4225 | 2e-24 | 3321 - 3380 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.2 | 4134 | 2e-24 | 3198 - 3257 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.3 | 4258 | 2e-24 | 3321 - 3380 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.5 | 3191 | 2e-24 | 2315 - 2374 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.12 | 2193 | 2e-24 | 1278 - 1337 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.13 | 2278 | 2e-24 | 1365 - 1424 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.16 | 1236 | 2e-24 | 213 - 272 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.4 | 3418 | 2e-24 | 2321 - 2380 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.14 | 2302 | 2e-24 | 1236 - 1295 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.15 | 2111 | 2e-24 | 1077 - 1136 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.8 | 3243 | 2e-24 | 2219 - 2278 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.6 | 3098 | 2e-24 | 2192 - 2251 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.9 | 2805 | 2e-24 | 1777 - 1836 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.10 | 2928 | 2e-24 | 1900 - 1959 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.11 | 2960 | 2e-24 | 1900 - 1959 | 100 | 60 / 60 | plus | ABC13533 |
| JLOC1 | JLOC1_7442.6 | 2300 | 8e-25 | 1200 - 1259 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7442.5 | 2176 | 8e-25 | 1108 - 1167 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7442.4 | 2410 | 8e-25 | 1342 - 1401 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7442.3 | 2455 | 8e-25 | 1355 - 1414 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7442.2 | 2423 | 8e-25 | 1355 - 1414 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7442.1 | 2209 | 8e-25 | 1109 - 1168 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC11281 | 1403 | 3e-25 | 1343 - 1402 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_19841 | 1254 | 3e-25 | 1192 - 1251 | 100 | 60 / 60 | plus |
Contig Sequence (1254 bp)
>U35_19841 1254 Hv_44K_v2 TAATATTTTGACTTCCTGTTGCCTTGATCGTTCTTTGGGCATCATCACAATGTCAGGATC ACTGAATTCAAATATTGGTGGGGATTCAACAGGAAGGCCATTCACATCAACCTTTTCTGG TCAGTCTGGATCATTTCCTAATTTCCATCACTCTGGCCTGCATAATATCCACGGAAATCT CAATCTTGCATCACTATCGCCAAGGAATGCTTCATTGTCAGGTATTCCATCCCCAGGTGT TCAACAACCTGGGGGCAATATTTCTGGTAGCCGGTTTCCCTCAAATAACCTTCCAGTGTC CATGTCTCAGATTTCTCATGGTCATTCTGGGATCAGCAACCGAGGAGGTATGAATGTTGG GGGGAATCCTGTATTTAGTAGTAGCATGAATGCTATTGGTGGTTCAGCACAAGGTTTATC CTCAAGCATGGCTAATGTTGGTAACCGAAATTCTGCTCCTGGGTTGACAGCTTCTTCAGT TTTGGGGAACTTAGGCCCACGTATAACAAATTCTGCGGGCAATATAGTGGGTGGCAGCAG TATTGGCAGAAGCATAAGCTCAGCAGGAATGTCCATGCCTGGTATTTCATCCCGTATCAA TTCGAGTGGCAACTCTGGAAGTGGGGCTCTTAATATCCCATCCAATCGTCTGAGTAGTAT GCATCAAGCGTCGCCACAGTTCATGAACATTCTAGGGAGTTCTTATCCAGCACAAGGAGG AACGCTATCTCAGAACCAAGTTCAGGCAGGAAACAATTCTTTTAGTTCTTCAGGAATGCT ACATGACGGAAACTCTGGTGACAATTCTCCGTTTGACATAAATGATTTTCCCCAATTAAC TGGACGTCCTAATTCTGCTGGAGGTGGTCAAGGGCAATATGGGTCACTACGAAAGCAAGG AGTAAGTGTAAATGCCATTGTGCAACAAAATCAGGAGTTCAGCATTCAGAATGAAGATTT TCCAGCTTTACCAGGATATAAAGGCAATTCGTCAGATTATGGTATGGATTTGCATCACAA GGACCACCTTCATGAAAATGCAAATATTATGCAGGCACAACATTTTCCCATGGGTAGATC ATCTGGCTTTAATTTGGGAGGTAGCTATCCACCCCGCCAACAACAGCAGCAGAGCACTAC TTCGGTCCAAAATGGTCTTGATAATATCGGGCTAAGGCCGATAAATTCTCCAAGTCCGTC TTCTAATTCGGGGTCTTATGAGCAACTCATCCAGCAATACCATCAACCTCAGAC
Homology of Contig U35_19841 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g54120.4 | 623 | 2e-140 | protein|CCR4-NOT transcription factor, putative, expressed |
| Brachypodium v1_2 | Bradi2g21970.8 | 613 | 0.0 | |
| Arabidopsis v10 | AT5G59710.1 | 614 | 4e-101 | | Symbols: VIP2, AtVIP2 | VIRE2 interacting protein 2 | chr5:24058157-24061736 FORWARD LENGTH=614 |