barSeed - Barley Seed Development Database

Probe ABC13312

Source Contig ABC13312

barSeed

Links

Affymetrix Source Sequence (599 bp)

>ABC13312 599
GCACGAGGAGGTGCTCGTCGACCTCGAGGACAAGGCGGTGTGGGTGGACGTGCCGCCGGT
GGCCGGAGCGCTGGTGGTGAACGTCGGCGACTTCCTGCAGCTCATGTCCAACGACAGGTT
CAAGAGCGTGGAGCACCGCGTGGTGTCCAACGGCGTGGGGCCACGGGTCTCGGTGGCGTG
CTTCTTCCGGACGGACCGCGCCGCGGCGGCGACGAGGGTGCTAGCGCCGATCGTCGCCGT
CCGCGACGAGGCGCGGTACAGGAGCGCGACGGTGGAGGAGGTGGTCCGGCAGTACTACAA
GGTCAAGGGCCTCGCCGGCACCTCTGCGCTTCAGCACTTCAGGCTCTGAATCTCTTCATC
CAGATTGTATCTTTACAATTACGAGACACAAATTAAGAAGTTCAGCAAAGCAGAGCAACA
GCAAGAAGCAGCACAGGATGCAACTATGCAAGCATGTGACAGAGTCTGGACAGCCTGAAA
AAGACTGAAATTTGAAGCATCAGTTGAGGGTTTTTAAAATCCAAGCGGCGATCCATCACT
TGCTCTAGCTACTCACGCCGACTTTTCGCTTTAACCCTTTCGGCAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_11545.1	697	0.0	288 - 697	96	394 / 410	CUST_36287_PI390587928	ABC13312
MLOC_61547.1	1387	4e-96	889 - 1199	87	275 / 315	None	ABC13312
MLOC_61548.1	3161	4e-96	856 - 1166	87	275 / 315	CUST_5588_PI390587928 CUST_24201_PI390587928	ABC13312 ABC13606
MLOC_61548.2	3184	4e-96	856 - 1166	87	275 / 315	CUST_5588_PI390587928 CUST_24201_PI390587928	ABC13312 ABC13606
AK365261	1231	1e-86	805 - 1076	88	240 / 272	None	ABC13312 ABC14312
MLOC_760.1	1663	1e-86	380 - 651	88	240 / 272	None	ABC13312 ABC14312
MLOC_16211.1	778	1e-85	59 - 383	85	280 / 331	None	ABC13312
MLOC_55350.1	1962	1e-76	643 - 974	83	284 / 344	CUST_8848_PI390587928 CUST_4356_PI390587928 CUST_27566_PI390587928	ABC13312 ABC41288
MLOC_62020.1	1323	1e-71	875 - 1174	83	259 / 312	CUST_35390_PI390587928 CUST_27566_PI390587928	ABC13312
MLOC_73240.1	1412	1e-70	207 - 519	82	265 / 322	CUST_18495_PI390587928 CUST_2968_PI390587928	ABC13312