barSeed - Barley Seed Development Database

Probe CUST_5588_PI390587928

Source Contig U35_9783

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5588_PI390587928	Hv_44K_v2	GTACATGGCGTCACTGTATAGTCAATCGCACTATAACATGTCTTTGAGCAAGGAATTCGA	786	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.578	0.812	1.766	2.298	0.997	0.491
Raw	13.800	31.243	57.731	115.361	17.828	9.597

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371533	1877	2e-24	875 - 934	100	60 / 60	plus	ABC13606
MLOC	MLOC_61548.4	2093	2e-24	833 - 892	100	60 / 60	minus	ABC13606
MLOC	MLOC_61548.5	1461	2e-24	536 - 595	100	60 / 60	minus	None
MLOC	MLOC_61548.1	3161	2e-24	2429 - 2488	100	60 / 60	minus	ABC13312 ABC13606
MLOC	MLOC_61548.2	3184	2e-24	2429 - 2488	100	60 / 60	minus	ABC13312 ABC13606
MLOC	MLOC_61548.3	2006	2e-24	965 - 1024	100	60 / 60	minus	ABC13606
JLOC1	JLOC1_40221.5	3405	8e-25	860 - 919	100	60 / 60	plus
JLOC1	JLOC1_40221.4	3382	8e-25	837 - 896	100	60 / 60	plus
JLOC1	JLOC1_40221.3	3272	8e-25	727 - 786	100	60 / 60	plus
JLOC1	JLOC1_40221.2	3201	8e-25	660 - 719	100	60 / 60	plus
JLOC1	JLOC1_40221.1	3219	8e-25	678 - 737	100	60 / 60	plus
Harvest21	ABC20252	846	3e-25	787 - 846	100	60 / 60	plus
Harvest35	U35_9783	846	3e-25	787 - 846	100	60 / 60	plus

Contig Sequence (846 bp)

>U35_9783 846 Hv_44K_v2
CCCGCAGAGGGCGGCCATGGCGATCCCGCGCCTCCGCCCCCTCCTCCTCGTCGCCGTCCT
CCTCCTCCGCGCCTTCGCCTCGCTCCCCACGCAAGCCGCCGCGAGGGGCGGCCTCGACCC
GTCGCCAGGCATCGCCGATAGGAAACATGGGTCGTCCTCGCGCAGTCTCCTTCAGGATCA
GCCCGAGATCACGGAAGAAATGGTTCGCGGATATATGAGCAACTTTGAGCTTGAGAGTGC
TATACAGGACTTTGGGAGGCGCTGTGCTAATATCTCCAGGACATACAGCATCGGGAAGAG
TGTAAATGGTTCCCCATTGTGGGCCATTGAAATATCAGACAAGCCTGGGCAAAGAGAAGC
TGAACCAGCATTCAAGTTTATTGGGAATGTCCATGGTGATGAGCCTGTTGGAAGAGAGGT
CCTTATGCAACTTGCGTATTGGCTGTGTGATAACTACCTGAAGGATCCTTTGGCAGCTCT
TATTGTGGAGAACACACACCTTCATATACTTCCATCAATGAATCCAGATGGATTTGCTCT
TAGAAGGCGTGGTAATGCAAACAATGTTGATCTCAACAGGGACTTTCCTGACCAATTTTT
CCCCAACAATGATGATATTAAGCACCGGCAACCTGAAACTAGAGCTATTATGAACTGGAT
AAAGCAAGAACACTTCACAGCCTCTGCTAGTTTGCATGGGGGTGCTCTTGTTGCAAATTA
TCCATGGGATGGATCTAGAGATACAAGAAAACAGTATTATGGATGTCCAGATGACAAGAC
ATTCAGGTACATGGCGTCACTGTATAGTCAATCGCACTATAACATGTCTTTGAGCAAGGA
ATTCGA

Homology of Contig U35_9783 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g05240.1	351	1e-138	protein\|zinc carboxypeptidase family protein, putative, expressed
Brachypodium v1_2	Bradi1g51230.1	490	6e-152
Arabidopsis v10	AT1G71696.2	491	6e-109	\| Symbols: SOL1 \| carboxypeptidase D, putative \| chr1:26966996-26970364 FORWARD LENGTH=491