- Probe CUST_24201_PI390587928
- Source Contig U35_20766
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24201_PI390587928 | Hv_44K_v2 | TGGATAGAGTGGATCAGTGACGCAGACCGAGTATCTTAGTTTTGTGGTCTCATCATCAAA | 638 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.058 | 1.481 | 1.277 | 0.992 | 0.351 | 0.395 |
| Raw | 472.760 | 1021.725 | 775.328 | 932.438 | 118.594 | 142.611 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61548.1 | 3161 | 6e-24 | 1519 - 1577 | 100 | 59 / 59 | minus | ABC13312 ABC13606 |
| MLOC | MLOC_61548.2 | 3184 | 6e-24 | 1519 - 1577 | 100 | 59 / 59 | minus | ABC13312 ABC13606 |
| MLOC | MLOC_61548.3 | 2006 | 6e-24 | 55 - 113 | 100 | 59 / 59 | minus | ABC13606 |
| MLOC | AK371533 | 1877 | 3e-22 | 1786 - 1844 | 98 | 58 / 59 | plus | ABC13606 |
| JLOC1 | JLOC1_40221.5 | 3405 | 3e-24 | 1771 - 1829 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_40221.4 | 3382 | 3e-24 | 1748 - 1806 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_40221.3 | 3272 | 3e-24 | 1638 - 1696 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_40221.2 | 3201 | 3e-24 | 1567 - 1625 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_40221.1 | 3219 | 3e-24 | 1585 - 1643 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC13607 | 712 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_20766 | 712 | 3e-25 | 639 - 698 | 100 | 60 / 60 | plus |
Contig Sequence (712 bp)
>U35_20766 712 Hv_44K_v2 ATTTGCTGCAGATACTGGCCGTCCTATACCAGGCTCACTCATGGTGAAGGGAATTGATTC AAAGATAAATGCTAGCGGATCTTTTGGCGATTACCATAGGATTCTTGCACCTGGTCAGAG CTATGAAGTTGTGGCGTCGATGGAAGGCTACAGACCGAAAAGAACACGTGTCATGCTGGG GCGCGAAGCCACGAATCTGGACTTCATCTTGGACCCAGACGGAGCTGTCAGGCGAACCAA GCCGCTCCGCAATGACTGCGGCTGCAGTTGCAATGACAACAGCAACACCGGCAAGCCTTT CCTCCTCCGGGAAGCTTACCTCTGGCTGTATCTCCTGGCCCTGTTCTTCCTGCTGGCGCT TTACCTGCTCTTCAGGAGGAGAATGGCGTCGAGGCTCGCGGCTCATCGTCACCCACCGCC GAAACGGCCTGTTGCCGTGTGACTGAGATGAATAATCTGTCTGTTCTAGGGCTGCTATGT AGCATAATCGCCGCCTTTACGATCTGTTGTACGCAAGTTGGATTAGATCGTGGCCGTAAA ATGTGCCATGGAAGTTTTGCATAGTCTTAGCTGGAGATATTATGTGTTTTTACTGAATTC GTGCGAGTTAAGTGGATACAAAATTACAGATATGAAGATGGATAGAGTGGATCAGTGACG CAGACCGAGTATCTTAGTTTTGTGGTCTCATCATCAAAAAAAAAAAAAAAAA
Homology of Contig U35_20766 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |