barSeed - Barley Seed Development Database

Probe ABC13000

Source Contig ABC13000

barSeed

Links

Affymetrix Source Sequence (842 bp)

>ABC13000 842
TTGGATTAGTGTTGAACACGATTGCTATCTTCTACCATTCATTAGCGGCTATCCCATTTG
GCACAATGGTTGTCATATTTGTCCTCTGGGCTTTTATCTCTTTCCCACTGGTGCTATTGG
GAACAGTAGTTGGTAGAAACTGGAGTGGTGCTCCCAATAACCCATGCCGTGTGAAGACAA
TCCCACGTCCTATTCCTGAGAAGAAGTGGTACCTAACACCTTCTGTTATCTCATTGATGG
GCGGGCTTCTTCCCTTCGGCAGCATTTTCATCGAGATGTACTTTGTGTTTACTTCATTCT
GGAACTACAAGGTGTACTATGTTTATGGCTTCATGTTGCTAGTCTTTGTCATCCTCCTAA
TCGTAACAGTATGTGTCACTATTGTGGGCACTTATTTCTTGTTGAATGCTGAGAACTATC
ATTGGCAATGGACATCGTTCTTCTCGGCTGCATCAACCGCCTTGTATGTATATCTATACG
CTATATACTATTATCACGTGAAGACAAAGATGTCGGGCTTTTTCCAGACTAGCTTCTACT
TCGGCTACACGTTGATGTTCTGTCTTGGGCTAGGCATACTTTGTGGTGCTATTGGCTATC
TGGGGTCAACTTTGTTTGTCAGGAGAATCTACAGAAACATCAAATGCGACTAAACTGCTT
CTCCGATTCTGTAGGCTATTAGCACTTAGCAGATCATGTGTTGTTGAGTAACGCTTCTAA
GATTCTAATTAACTTTTGGAAACTATACAGGAGGTGGTTCTCCCTTCGTTTACTTAATAC
TTTGATTTTTGGTCTATATCTACCTCCGTCATCAAACGTGTCCCATAAATTGTATACCTA
TA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_54701.1	2077	0.0	1262 - 2077	99	815 / 816	CUST_13020_PI390587928	ABC13000
MLOC_54701.2	1210	0.0	310 - 1062	99	752 / 753	None	ABC13000
AK356301	2407	0.0	1242 - 1882	88	561 / 641	CUST_28177_PI390587928	ABC04734 ABC13000
MLOC_57983.8	903	0.0	355 - 900	88	482 / 546	None	ABC04734 ABC13000
MLOC_57983.1	3089	3e-69	2881 - 3086	90	185 / 206	CUST_6360_PI390587928 CUST_28177_PI390587928	ABC04734 ABC09435 ABC13000