barSeed - Barley Seed Development Database

Probe CUST_28177_PI390587928

Source Contig U35_16160

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28177_PI390587928	Hv_44K_v2	CTTTCGATGTAGCGGTGCTTTTGTAACTGTGATGTCTATTTATTTGTAACTTTTGAGGTA	2333	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.973	1.685	1.048	0.876	0.267	0.219
Raw	217.666	290.089	160.087	207.987	22.786	19.951

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57983.1	3089	2e-24	1647 - 1706	100	60 / 60	minus	ABC04734 ABC09435 ABC13000
MLOC	AK356301	2407	6e-24	2349 - 2407	100	59 / 59	plus	ABC04734 ABC13000
JLOC1	JLOC1_37642.3	2723	8e-25	1605 - 1664	100	60 / 60	minus
Harvest21	ABC04734	705	5e-23	631 - 689	98	59 / 60	plus	ABC04734
Harvest35	U35_16160	2409	3e-25	2334 - 2393	100	60 / 60	plus

Contig Sequence (2409 bp)

>U35_16160 2409 Hv_44K_v2
GCGGCAGCTCTCTCGGGCCAAACCCGACCGAAGGCTCGCGACCGCCTCCTCTTCATCCTC
AGATCTCTCCGGCGGCGGAATGCTCCCCTCCCCCCGCGGCAGCGGCCGCAGAAGCCTCGT
CCTCGTCCTCTCGCTCACCGCCGTCCTCGCCTTCGCTTCTCCGCACCGCGCGTCCGCCTC
AGAGTCCGACCACAAGTACAAATCTGGAGATTCAGTTAAGCTCTGGGTGAATAAAGTTGG
ACCTTACAATAATCCTCAAGAAACTTACAACTATCACAGCCTCCCATTTTGTCAGCCATC
TGAGAACCCTGGGCACAAGTGGGGTGGTCTTGGAGAAGTCCTGGGTGGGAACGAGTTGAT
TGATAGTCAGCTTGACATAAAGTTCTTAAAAAATGTGGAAAGGGGGTCCATTTGCACACT
GGAACTAGATTCCAAAAAGATTCAACAATTTGCTGATGCCATTGAAAGCTCGTACTGGTT
TGAATTTTTCATAGATGATCTGCCTCTTTGGGGTTTCGTTGGAGAGACTGACAAAAACAG
TGAAAACAAGCACTATCTTTACACACACAAGAATATTCTTGTAAAGTACAACGATAACAG
GATAATTCATGTTAATCTCACCCAAGAGTCTCCGAAGCTTCTTGAAGCTGGCAAGAAGTT
GGAACTGACATATTCAGTGAAGTGGGTACCAACAGATGTTTCATTTGCACGCCGTTTTGA
AGTTTACCTGGACTATCCTTTCTTTGAACACCAGATTCACTGGTTCTCCATTTTCAATTC
TTTCATGATGGTTATTTTTCTCACTGGTTTGGTTTCAATGATATTGATGCGAACACTGAG
AAATGATTATGCAAAATATGCTCGCGATGATGATGATCTAGAGTCACTGGAGAGAGATGT
TAATGAGGAATCTGGGTGGAAACTTGTCCATGGTGATGTATTTCGTCCTCCTAGAAGCTT
GACACTTCTTTCTGCTCTTGTTGGTATCGGCACCCAGCTGGCAGCTCTTATCCTACTTGT
GATTGTATTGGCCATCGTTGGCATGTTATATGTTGGGCGAGGGGCTATCATCACAACCTT
CATCGTGTGCTATGCTCTTACATCTTTTATTTCTGGATATGTTAGTGCTGGTCTTTACTC
GAGGAATGGCGGTAAAAACTGGATAAAGGCTATGATCCTTACAGCATCCCTCTTTCCATT
CTTGCACTTTGCCATTGGCTTTGCGCTGAATACAATTGCAATCTTCTACGGGTCATTAGC
AGCAATACCATTTGGTACAATGGTTGTCATGTTTGTCCTTTGGGCTTTCATATCTTTTCC
GCTGGTACTTTTGGGAACGGTCGTTGGTAGAAACTGGAGTGGGGCTCCTAACAATCCCTG
CCGAGTAAAGACTATTCCACGGCCTATTCCTGAGAGGAAGTGGTACCTTACACCTTCTGT
CATCTCATTGATGGGCGGGCTTCTTCCCTTTGGCAGCATCTTCATCGAGATGTACTTTGT
GTTCACCTCATTCTGGAACTACAAGGTGTATTATGTTTACGGCTTCATGTTGCTGGTCTT
TGTCATTCTTCTAATAGTTACAATCTGTGTCACAATTGTTGGTACTTATTTCTTGCTGAA
TGCTGAGAACTATCATTGGCAATGGACTTCGTTTTTCTCTGCCGCATCAACAGCGCTATA
TGTGTATCTGTACTCCATCTACTACTATCATGTGAAGACAAAGATGTCCGGCTTTTTCCA
GACAAGTTTCTACTTTGGCTACACATTGATGTTCTGTCTTGGTCTGGGCATACTTTGCGG
TGCTATTGGCTATGTAGGGTCAACTCTTTTTGTGAGGAGAATCTACAGAAACATCAAATG
TGATTAATTTCCTGCTACATATGTGGGGTGGGGGCGGAGCAGTATCAGAAGAAATCATAT
ACGTGCCATTGCTTTGGAAGTGAGGCCTTCAAAATGGATTAATGCTAGTTCCTGATTAGG
GTTTCAGAACTACGCCCCGTTCGCTTATTCCATCACACCCCTTCTTTTTGCATACTTATT
TGTTCCCTGGAGCTGCTCTCATAGTGTATACATCTGTGGTAGCTTAGGAGTTCAGTACAA
GTGCCTGGTGCAGGTTCTTATTTTTCTTTGTTTCTTTTGTTGCATTCCTCCTTTTCAAAT
CAGAAATAGGAAGTGAGTATCCATGCGGCACTGTCTGGACTTCCCCTCTGAATTGTTGCG
TCCAATTCAAGGATATCATGTACTACGTGAGATCTGTGTATTTATATATATCAACATTTA
ATGCATGAGAGTATGTGTGTCCTCTAAAAAAAAAAAAAAAAACTGTGAAAATCCTTTCGA
TGTAGCGGTGCTTTTGTAACTGTGATGTCTATTTATTTGTAACTTTTGAGGTAAAAAAAA
AAAAAAAAA

Homology of Contig U35_16160 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g07670.1	599	protein\|transmembrane 9 superfamily member, putative, expressed
Brachypodium v1_2	Bradi4g41270.1	595
Arabidopsis v10	AT1G10950.1	589	\| Symbols: TMN1, AtTMN1 \| transmembrane nine 1 \| chr1:3659322-3663622 FORWARD LENGTH=589