barSeed - Barley Seed Development Database

Probe CUST_13020_PI390587928

Source Contig U35_25996

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13020_PI390587928	Hv_44K_v2	AATCTCACACAAGAGTCACCTAAGCTTCTTGGAGCTGGAAGAAAATTGGACATGACATAT	636	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.172	0.923	1.128	1.138	0.693	0.512
Raw	293.716	316.140	386.568	578.781	132.178	105.234

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54701.1	2077	7e-23	661 - 720	98	59 / 60	plus	ABC13000
JLOC1	JLOC1_35220.1	2378	4e-23	673 - 732	98	59 / 60	plus
Harvest21	ABC39058	660	3e-25	598 - 657	100	60 / 60	plus
Harvest35	U35_25996	699	3e-25	637 - 696	100	60 / 60	plus

Contig Sequence (699 bp)

>U35_25996 699 Hv_44K_v2
TTCCTCGAGCACTGTTGGCCTCTGGGAGACGAGACCAACCGCGCAGGCAGGCTCGGAAGG
GCGACGCAAACCCCCCAACCCGCGTCCACCCTCCACTCAGATCTCGCGGCCGCCGCCGCC
GCCGCCGCCGAGATGCTCCTCCTCCGCGGCCTCCTCCTCGCCGCGCTCCTCGCCGTCGCG
CGTCCGCCCCTGGCGTCCGCCTCCGAGTCCGATCACAAGTACAAAATTTCAGAACCAGTT
AAGCTCTGGGTAAACAAGGTTGGCCCGTACAATAATCCTCAGGAAACATACAACTATTAC
AGCCTTCCGTTTTGTCAACCAGCTGAAAACCCTGCACATAAATGGGGTGGACTTGGAGAG
GTTCTGGGTGGAAATGAGCTGATTGATAGTCAGATTGATATACAGTTTTTGAAAAATGTG
GACAAGGGCCCCGTTTGCACAATTGAACTTGATGCTAAAAAGGTTCAGCAATTTACTGAT
GCCATTGAAAGCTCATACTGGTTTGAGCTTTTCATAGATGATCTGCCATTGTGGGGTTTT
GTTGGGGAGACTGACAAAAACAATGAAAACAAGCACTATCTTTACACACACAAGAATATT
GTTGTTAAATACAACGGTAACAGGGTAATTCATGTCAATCTCACACAAGAGTCACCTAAG
CTTCTTGGAGCTGGAAGAAAATTGGACATGACATATTCA

Homology of Contig U35_25996 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g07910.1	594	1e-97	protein\|transmembrane 9 superfamily member, putative, expressed
Brachypodium v1_2	Bradi4g23990.1	586	2e-99
Arabidopsis v10	AT1G10950.1	589	1e-72	\| Symbols: TMN1, AtTMN1 \| transmembrane nine 1 \| chr1:3659322-3663622 FORWARD LENGTH=589