barSeed - Barley Seed Development Database

Probe ABC12818

Source Contig ABC12818

barSeed

Links

Affymetrix Source Sequence (613 bp)

>ABC12818 613
GGATCCCCCGGGCTGATTAATTCGGACTAGGATTTCTCTTTGTTGCTCTTGTGATCTTCC
GTAGCGACAAGAAGTCAAGGGCAACACCTTCGATGGCACGAGGAACCATCATACCCACCC
TTCAACTGTTGCTTCTCGCCGTTTGCTGCGCAACCACCGTTGTGCATGGCAAGGAGTGGA
CTGTTGGTGACAGCAAGGGATGGACCTTCGGTGTCTCTGGTTGGGAGAGGGCAAAGCGCA
TCCAATCCGGTGACGTGCTTGTGTTCAAGTACAACCCGAGTATGCACAACGTGGTGCAGG
TGGGAGAAGGTGACTACAACTCATGCAAGGTCTCTGGCCCGTCAAGGACCCACACCTCCG
GCAATGACCATATCAAGCTCGCCCCCGGTGGCAAAGCATTCTTCATTTGCAGTTTTCCAG
GTCACTGCCAGCAAGGCATGAAGACCGCTGTCACTGCTTAATGTGTCCCTTTTAGGGGTA
GAGATTATTTGAGACGAATCGCAAAAGTGCAATACATCGCTCAATTAATGTTATTTTGAA
ATCATCGTTCCTCACTTAACCAATGTTATTTTGAAATCATCATACCTTGCTTAATCAAAA
AAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_57898.2	537	0.0	24 - 537	99	507 / 514	CUST_32535_PI390587928	ABC00077 ABC00195 ABC12818
MLOC_57898.1	840	1e-116	39 - 275	99	234 / 237	CUST_36038_PI390587928 CUST_32535_PI390587928	ABC00077 ABC00195 ABC12818
MLOC_47606.1	530	6e-144	42 - 465	88	376 / 425	CUST_35784_PI390587928	ABC00077 ABC00195 ABC12818
MLOC_24786.4	580	3e-137	38 - 461	88	372 / 425	CUST_36037_PI390587928	ABC00077 ABC00195 ABC12818
MLOC_28859.1	598	3e-137	85 - 508	88	372 / 425	None	ABC00077 ABC00195 ABC12818
MLOC_78880.1	566	2e-128	44 - 472	86	371 / 431	None	ABC00077 ABC00195 ABC12818
MLOC_24786.2	677	1e-111	136 - 551	84	358 / 425	CUST_36037_PI390587928	ABC00077 ABC00195 ABC12818
MLOC_28859.2	842	1e-65	406 - 607	89	180 / 202	CUST_35785_PI390587928 CUST_36037_PI390587928	ABC00077 ABC00195 ABC12818
MLOC_24786.1	784	1e-65	136 - 337	89	180 / 202	CUST_36037_PI390587928	ABC00077 ABC00195 ABC12818
MLOC_78880.2	719	1e-60	370 - 571	88	177 / 202	None	ABC00077 ABC00195 ABC12818