- Probe CUST_32535_PI390587928
- Source Contig U35_29558
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32535_PI390587928 | Hv_44K_v2 | GGGTAGAGATTATTTGAGACGAATCGCAAAAGTGCAATACATCGCTCAATTAATGTTATT | 231 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.722 | 1.483 | 1.444 | 0.641 | 0.145 | 0.153 |
| Raw | 61407.433 | 79810.300 | 68715.600 | 45978.100 | 3949.880 | 4476.643 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57898.2 | 537 | 2e-24 | 475 - 534 | 100 | 60 / 60 | plus | ABC00077 ABC00195 ABC12818 |
| MLOC | MLOC_57898.1 | 840 | 2e-24 | 591 - 650 | 100 | 60 / 60 | plus | ABC00077 ABC00195 ABC12818 |
| JLOC1 | JLOC1_37598.1 | 671 | 8e-25 | 479 - 538 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28889 | 306 | 3e-25 | 232 - 291 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC12818 | 613 | 3e-25 | 476 - 535 | 100 | 60 / 60 | plus | ABC12818 |
| Harvest35 | U35_29558 | 306 | 3e-25 | 232 - 291 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1564 | 600 | 3e-25 | 463 - 522 | 100 | 60 / 60 | plus |
Contig Sequence (306 bp)
>U35_29558 306 Hv_44K_v2 GCGACTACCATTTCTCTTTGTTGCTCTTGTGATCTTCCGTAGCGACAAGAAGTCAAGGGC AACACCTTCGATGGCACAGCAAGGGATGGACCTTCGGTGTCTCCGGTTGGGAGAGGGCAA TGACCATATCAAGCTCGCCCCCGGTGGCAAAGCATTCTTCATTTGCAGTTTTCCAGGTCA CTGCCAGCAAGGCATGAAGATCGCTGTCACTGCTTAATGTGTCCCTTTTAGGGGTAGAGA TTATTTGAGACGAATCGCAAAAGTGCAATACATCGCTCAATTAATGTTATTTTTGAAATC ATCGTT
Homology of Contig U35_29558 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |