- Probe CUST_36038_PI390587928
- Source Contig U35_1564
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36038_PI390587928 | Hv_44K_v2 | GAATCGCAAAAGTGCAATACATCGCTCAATTAATGTTATTTTGAAATCATCGTTCCTCAC | 482 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.854 | 1.619 | 1.566 | 0.643 | 0.146 | 0.158 |
| Raw | 38382.500 | 51172.933 | 43124.667 | 26489.863 | 2318.460 | 2693.167 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57898.1 | 840 | 2e-24 | 611 - 670 | 100 | 60 / 60 | plus | ABC00077 ABC00195 ABC12818 |
| JLOC1 | JLOC1_37598.1 | 671 | 8e-25 | 499 - 558 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC12818 | 613 | 3e-25 | 496 - 555 | 100 | 60 / 60 | plus | ABC12818 |
| Harvest35 | U35_1564 | 600 | 3e-25 | 483 - 542 | 100 | 60 / 60 | plus |
Contig Sequence (600 bp)
>U35_1564 600 Hv_44K_v2 CTTGAGGAAGCGACTACAATTTCTCTTTGTTGCTCTTGTGATCTTCCGTAGCGACAAGAA GTCAAGGGCAACACCTTCGATGGCACGAGGAACCATCATACCCACCCTTCAACTGTTGCT TCTCGCCGTTTGCTGCGCAACCACCGTTGTGCATGGCAAGGAGTGGACTGTTGGTGACAG CAAGGGATGGACCTTCGGTGTCTCCGGTTGGGAGAGGGCAAAGCGCATCCAATCCGGTGA CGTGCTTGTGTTCAAGTACAACCCGAGTATGCACAACGTGGTGCAGGTGGGAGAAGGTGA CTACAACTCATGCAAGGTCTCTGGCCCGTCAAGGACCCACACCTCTGGCAATGACCATAT CAAGCTCGCCCCCGGTGGCAAAGCGTTCTTCATATGCAGTTTTCCAGGTCACTGCCAGCA AGGCATGAAGATCGCTGTCACTGCTTAATGTGTCCCTTTTAGGGGTAGAGATTATTTGAG ACGAATCGCAAAAGTGCAATACATCGCTCAATTAATGTTATTTTGAAATCATCGTTCCTC ACTTAACCAATGTTATTTTGAAATCATCATACCTTGCTTAATCAAAAAAAAAAAAAAAAA
Homology of Contig U35_1564 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |