barSeed - Barley Seed Development Database

Probe ABC12712

Source Contig ABC12712

barSeed

Links

Affymetrix Source Sequence (2458 bp)

>ABC12712 2458
CCTGATTGGTTAGGCGTTAGAACTTGGAGCATATGGGTTCCAAAGAAATGCCCCGTCGTA
CTCGTACTATTCTCTGCTTCTTGCTTCTCTTCTGCGTGAGCTGCAAATGTTTGGCATCAG
AATTTGAGATCACCCAAGTGGCAAGCCTTGGTGTTGATTCCTCACCGCACCTTGCTCGAA
AGATCCCTGATACGCTGTTTGGAATATTCTTTGAGGAGATCAACCATGCAGGAGCTGGTG
GAATATGGGCAGAACTTGTTAGTAATAGAGGTTTTGAAGCAGGAGGCCCCCATACTCCAT
CAAATATTAATCCATGGTCCATCATTGGAGATGACTCTTCCATATTTGTGGGAACAGACC
GTACGTCATGTTTCAGTCGAAACAAGGTTGCTCTAAGAATGGAGGTTCTCTGTGATAACT
GCCCAGTTGGCGGTGTTGGCATTTACAACCCTGGGTTCTGGGGCATGAACATAGAAGATG
GGAAGACCTACAATCTAGTTATGCATGTCAAGTCACCAGAGACGATAGAAATGACAGTTT
CACTAACAAGCTCTGACGGGCTACAAGTTTTGGCTTCAGCTGCCATACGAGTACCCGGCG
GATCAAATTGGATAAAATTGGACCAGAAGTTGGTTGCTAAAGGAACAGACAGAACCTCAA
GACTTCAAATAACAGCTAGGACGAAGGGAGTTGTCTGGCTTGATCAAGTATCACTCATGC
CTTCGGATACATACAAGGGGCATGGTTTCCGCACAGAACTCATATCCATGCTTTTGGATT
TAAAACCCCGGTTCTTGAGATTCCCTGGAGGTTGCTTTGTTGAAGGCAGTTGGTTAAGAA
ATGCATTCAGGTGGAGGGATTCTATAGGTCCATGGGAAGAGAGGCCTGGACACTATGGGG
ATGTCTGGAATTACTGGACGGATGATGGCCTCGGATATTATGAGTTTCTTCAGCTTGCTG
AAGACCTTGGTGCTGCCCCAGTCTGGGTATTCAACAATGGAATCAGCCACCATGATGAAG
TTGATACTACTGCTATTGCTCCTTTTGTAAAGGATATACTGGACAGTCTAGAATTTGCAA
GGGGGAGTGCAGAATCAACATGGGGTTCTGTTAGAGCTGCAATGGGGCATCCTGAACCAT
TCCCAGTCAAATATGTTGCAATTGGAAATGAAGATTGTGGGAAAGAAAATTACCGTGGTA
ACTACCTTAAGTTCTACAATGCTATAAGAGAGGCCTATCCAGACATTCAGATGATTTCAA
ATTGTGATGGTTCATCTACACCCCTTGACCATCCTGCTGATTTATATGATTTCCATGTCT
ATACCGGTTCCAGTGCACTATTTTCCATGAAGAATACATTTGACAATACCTCTCGTAGTG
GGCCCAAGGCTTTTGTTAGCGAGTATGCTGTTACAGGAAACGACGCAGGCAGAGGAAGTC
TTCTTGCTTCATTGGCAGAGGCCGCTTTCCTTACTGGGCTGGAGAAGAATAGTGATGTTG
TTCAGATGGCAAGCTATGCACCGCTCTTCATAAACGATAACGACCGCACGTGGAACCCAG
ACGCTATCGTCTTCAACTCCTGGCAGCAATACGGAACTCCCAGTTACTGGATGCAGACGC
TTTTCCGAGAATCAAGCGGTGCTACGGTCCATCCCATCAGTCTCAGTTCAAGCTGCTCTG
GTTTGCTGGCAGCATCTGCGATCACGTGGCATGATGACGAGAACAGCTTCCTGAGAGTGA
AGATTGTGAATTTCGGGCCAGATGCCGTGGGCCTCACCATCTCGGCGACTGGGCTCCAGG
GCAGCATCAATGCGTTCGGATCCACCGCGACCGTTCTCACATCTGGCGGTGTAATGGACG
AGAACTCTTTCGCTAACCCAAACAAGGTTGTGCCGGTGACGGTCGAGTTGCGCGACGCTG
CGGAGGAGATGCAGGTCACGCTGCCTCCTCACTCTCTCACTGCATTCGACCTGGCGCTGG
CGCAGTCCAGGCTTGTAGCGGACGTGTGAAGCGAATGACACGGTGTCGGTGAATAAGGGA
ACGATGGGCAGGGCAAAGCACCGGCAACAGCAAGCGGAGATGGGTCAGTGCGCGCGCTTG
TGTGCCGATAAAGCACTGGATCTTTTGTGTATGGCGCCTTGGCGGTGTGGCAGGAAGGAA
ATACATTACTATGCTAAATAAAAATCACGTCAGGCTTATTTTCTCTTCTTTTCTTTTCTA
ATGAAAGCACATTTTTAGTTTTTCTTGGCGAAGGCAATGGAAAAGGTCAGATGAACCCCA
GCCTCTGCATCGATAAGGCGAAGGCAAAGGAAAGGTGTGTCATTTTGTCAAATTCCTCGT
ATCACACGGAAGTTGACAGAATGACACAACTTTCATTGACCTTTGTCATGTAATACAACA
TCATAACAAGCCTTGCAAGCAATGTGATTAAGGAGTTAGTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_56099.3	2736	0.0	1 - 2411	99	2409 / 2411	CUST_13735_PI390587928	ABC03596 ABC05239 ABC12712
MLOC_56099.2	2855	2e-109	2315 - 2530	100	216 / 216	CUST_13735_PI390587928	ABC03596 ABC12712
MLOC_56099.5	3173	0.0	1813 - 2765	99	952 / 953	None	ABC03596 ABC12712
MLOC_56099.6	2238	0.0	1 - 849	100	849 / 849	None	ABC03596 ABC12712
MLOC_56099.1	2902	0.0	961 - 1513	100	553 / 553	CUST_13735_PI390587928	ABC03596 ABC12712
MLOC_44256.5	2455	0.0	411 - 2280	84	1584 / 1877	CUST_13892_PI390587928 CUST_13880_PI390587928	ABC03596 ABC05239 ABC12712
MLOC_44256.3	2521	0.0	480 - 2349	84	1584 / 1877	CUST_13880_PI390587928	ABC03596 ABC05239 ABC12712
MLOC_44256.2	2524	0.0	480 - 2352	84	1584 / 1880	CUST_13880_PI390587928	ABC03596 ABC05239 ABC12712
MLOC_56099.8	1616	1e-126	1 - 247	100	247 / 247	None	ABC03596 ABC12712
MLOC_56099.4	1574	0.0	864 - 1574	100	711 / 711	None	ABC03596 ABC05239 ABC12712
MLOC_56099.7	1392	1e-131	1134 - 1392	99	259 / 260	None	ABC03596 ABC12712
MLOC_44256.4	2492	0.0	461 - 1261	85	685 / 802	CUST_13880_PI390587928	ABC03596 ABC12712
MLOC_10876.2	2447	0.0	371 - 2182	77	1395 / 1818	CUST_21932_PI390587928	ABC03596 ABC05239 ABC12712 ABC52669
MLOC_44256.1	2688	0.0	1365 - 1956	87	518 / 594	CUST_13880_PI390587928	ABC03596 ABC12712
MLOC_10876.3	2683	0.0	1031 - 2384	77	1049 / 1359	None	ABC03596 ABC05239 ABC12712 ABC52669
MLOC_10876.7	521	2e-109	56 - 521	82	383 / 466	None	ABC03596 ABC05239 ABC12712