barSeed - Barley Seed Development Database

Probe CUST_21932_PI390587928

Source Contig U35_16456

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21932_PI390587928	Hv_44K_v2	TGTTGACCTGCCGCAAGCATATAAGAAAATATAAATGAAAAGGTTCCCACGATGAAAAAA	2297	GeneList: paleturquoise MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.573	3.795	1.210	0.713	0.238	0.380
Raw	3910.047	2541.930	702.787	707.822	74.955	135.460

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10876.1	1483	9e-22	80 - 134	100	55 / 55	minus	ABC05239 ABC52669
MLOC	MLOC_10876.2	2447	9e-22	70 - 124	100	55 / 55	minus	ABC03596 ABC05239 ABC12712 ABC52669
JLOC1	JLOC1_7152.1	2641	5e-22	2355 - 2409	100	55 / 55	plus
Harvest21	ABC52669	144	3e-25	74 - 133	100	60 / 60	plus	ABC52669
Harvest21	ABC05239	2367	6e-22	2298 - 2357	97	58 / 60	plus	ABC05239
Harvest35	U35_16456	2369	3e-25	2298 - 2357	100	60 / 60	plus

Contig Sequence (2369 bp)

>U35_16456 2369 Hv_44K_v2
GCAACACCATCGCGGCATCGCAGTTCACGCGCGCTCGGCATCCCCATCGCTCCTTCCTCG
AGCGTTGGCAAGAGGCTGGAGTAAGGGGAGGATGGGCAGCAAGGATGCGGCAACTTTGCA
TGCCATCCTCTGCTCCTTGCTTCTTCTCTCGTTGAGCTGCGGGTGCCTGGCGCTGGCGGC
AGAGCTCGAGGGGGCTCAGACGGCGCTGCTACAAGTCGATACATCATGGAAGGCCGCCAG
AAAGATCCCTCAAACCCTCTTTGGCTTGTTCTTTGAGGAAATCAACCACGCTGGAGCTGG
TGGATTATGGGCGGAGCTTGTCAGTAACAAAGGTTTTGAAGCCGGAGGGCCTCACACTCC
TTCAAACATAGATCCATGGTCTATCATTGGTGACGAATCCTCCATATACGTGAAGACTGA
AAGAACATCTTGTTTCAGTAGAAATATCGTTGCTCTAAGGATGGAAATTCTTTGTGCCAA
GTGTCCAGCTGGCGGTGTTGGTATTTACAACCCAGGATTCTGGGGCATGAACATAGAAGA
AGGGAAGAGCTATAATCTGGTAATGTATATCAGATCACTAGAATCCGTGGAGTTAGCTGC
TTCACTCACATGTTCAGATGGACTGCAAAATATAGCAACAGCTGTCATAGTAGATACAGA
TGTGTCAGATTGGAGAAAGATAGAGATGCAATTATTAGCTAAAGGAACGTGCAGAACTTC
AAGACTTGAGTTAACAACTTCCAAAAGGGGAGTCATATGGATCGATCAAGTGTCACTCAT
ACCTTCAGATACATACAAGGGCCATGGCTTTCGCAAGGAACTCATACACATGCTTATGGA
CTTAAGACCACGGTTCCTTCGATTTCCTGGTGGTACCTTTGTTGAAGGGAATTTGTTAAG
AAATGCTTTCAGATGGAGGGAAACTATCGGTCCATGGGAAGAGAGGCCTGGTCACTATGG
AGACGTCTGGAACTACTGGACAGATGATGGTCTTGGGTATTATGAGCTTCTCCAGCTTGC
GGAAGACCTGGCCGCCGAACCAATCTGGGTTTTTAACGCTGGGATCAGCCGGCATGATCA
AGTTGATATCACTGCTATTGCACCCTTTGTAAAGGATGTATTGGACAGCCTTGAGTTCGC
TAGGGGAAGTTTAAAATCAACATGGGGATCCGTTAGAGCTGCAATGGGGCATCCTGAACG
ATTTCCACTGAAGTATGTCGCGGTTGGGAATGAAGACTGTGACAACACCAAACCATTTTA
CCAGGGACATTACCTCAAGTTCTACAATGCCATACGAGAGGCCTATCCAGATATTCAAAT
TATTTCAAACTGTGACGGCTCATCTAAGCCACTTGACCATCCTGCGGATTTATATGATTT
CCATACATATAAGGATGCGAATAATATTTTTCTCATGAAAGATACGTTTAGCAGGACATC
ACGTACCGGGCCTAAGGTATTCGTTAGTGAGTATGCTGTTCATGTTGATGGGGATACCAG
CAAGGGAACCCTTCTAGCTTCATTGGCAGAAGCTGCATTCCTCATTGGATTAGAAGTGAA
TAGTGATATCGTCCACATGGCGAGCTATGCTCCACTCTTCGTAAATGAAAACGACCGCCA
GTGGACCCCAGATGCAATAGTCTTCAACTCCTGGCAACAGTATGGAACTCCTAGCTACTG
GATGCAGACATTTTTCCGTGAATCAAGTGGTGCTGTGATCCATCCTATGAGACTCAATTC
CAGCTACTCTGGTTCATTGGCAGCATCTGCAATTACCTGGGGAGACAATGAGGATATCTT
CCTGAGGATAAAGATTGTGAACTTTGGGTCAAATGCTGTGAACCTCACCTTATCTGCAAT
CGGACTGCAAGCTGGTGTCAATACGTCACGCTCAGCTGTCACCGTTCTCACATCCGACAA
TGTGTTGGATGAGAACACGTTCGATGACCCACGTAACGTTGTGCCAGAAAGAAGTGACCT
ACCCAATGCTGCAGAAGAGATGCAAGCCATGCTTGTTCCTCACTCTTTCACTTCATTTGA
TCTGGCTCTGGATCAGTACGGCGAGCTCGTAGCTGAGATGTGAAGAAGCAATGGTGAGAG
GTTTAGGCGAGGTGGAAACAAGATGATTTACATGAGGCATTGATCAGGTCTGGTTCATGG
ATTCCAGAAAGCAAGCAAAATGTGAAGTTCTCGTCCCTGGTTCATTGGAAGTATAGATAA
ATAGATATAGGTTTGTTTTTCTGGTATTTGCCTATCAGGCAAAATGTGATCGGTCCTTGT
ATCCATGACACACTACTTGTTGACCTGCCGCAAGCATATAAGAAAATATAAATGAAAAGG
TTCCCACGATGAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16456 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g03780.1	658	protein\|alpha-N-arabinofuranosidase, putative, expressed
Brachypodium v1_2	Bradi1g57017.1	661
Arabidopsis v10	AT3G10740.1	678	\| Symbols: ASD1, ARAF1, ARAF, ATASD1 \| alpha-L-arabinofuranosidase 1 \| chr3:3361031-3364573 REVERSE LENGTH=678