barSeed - Barley Seed Development Database

Probe ABC05239

Source Contig ABC05239

barSeed

Links

Affymetrix Source Sequence (2367 bp)

>ABC05239 2367
GCAACACCATCGCGGCATCGCAGTTCACGCGCGCTCGGCATCCCCATCGCTCCTTCCTCG
AGCGTTGGCAAGAGGCTGGAGTAAGGGGAGGATGGGCAGCAAGGATGCGGCAACTTTGCA
TGCCATCCTCTGCTCCTTGCTTCTTCTCTCGTTGAGCTGCGGGTGCCTGGCGCTGGCGGC
AGAGCTCGAGGGGGCTCAGACGGCGCTGCTACAAGTCGATACATCATGGAAGGCCGCCAG
AAAGATCCCTCAAACCCTCTTTGGCTTGTTCTTTGAGGAAATCAACCACGCTGGAGCTGG
TGGATTATGGGCGGAGCTTGTCAGTAACAAAGGTTTTGAAGCCGGAGGGCCTCACACTCC
TTCAAACATAGATCCATGGTCTATCATTGGTGACGAATCCTCCATATACGTGAAGACTGA
AAGAACATCTTGTTTCAGTAGAAATATCGTTGCTCTAAGGATGGAAATTCTTTGTGCCAA
GTGTCCAGCTGGCGGTGTTGGTATTTACAACCCAGGATTCTGGGGCATGAACATAGAAGA
AGGGAAGAGCTATAATCTGGTAATGTATATCAGATCACTAGAATCCGTGGAGTTAGCTGC
TTCACTCACATGTTCAGATGGACTGCAAAATATAGCAACAGCTGTCATAGTAGATACAGA
TGTGTCAGATTGGAGAAAGATAGAGATGCAATTATTAGCTAAAGGAACGTGCAGAACTTC
AAGACTTGAGTTAACAACTTCCAAAAGGGGAGTCATATGGATCGATCAAGTGTCACTCAT
ACCTTCAGATACATACAAGGGCCATGGCTTTCGCAAGGAACTCATACACATGCTTATGGA
CTTAAGACCACGGTTCCTTCGATTTCCTGGTGGTACCTTTGTTGAAGGGAATTTGTTAAG
AAATGCTTTCAGATGGAGGGAAACTATCGGTCCATGGGAAGAGAGGCCTGGTCACTATGG
AGACGTCTGGAACTACTGGACAGATGATGGTCTTGGGTATTATGAGCTTCTCCAGCTTGC
GGAAGACCTGGCCGCCGAACCAATCTGGGTTTTTAACGCTGGGATCAGCCGGCATGATCA
AGTTGATATCACTGCTATTGCACCCTTTGTAAAGGATGTATTGGACAGCCTTGAGTTCGC
TAGGGGAAGTTTAAAATCAACATGGGGATCCGTTAGAGCTGCAATGGGGCATCCTGAACG
ATTTCCACTGAAGTATGTCGCGGTTGGGAATGAAGACTGTGACAACACCAAACCATTTTA
CCAGGGACATTACCTCAAGTTCTACAATGCCATACGAGAGGCCTATCCAGATATTCAAAT
TATTTCAAACTGTGACGGCTCATCTAAGCCACTTGACCATCCTGCGGATTTATATGATTT
CCATACATATAAGGATGCGAATAATATTTTTCTCATGAAAGATACGTTTAGCAGGACATC
ACGTACCGGGCCTAAGGTATTCGTTAGTGAGTATGCTGTTCATGTTGATGGGGATACCAG
CAAGGGAACCCTTCTAGCTTCATTGGCAGAAGCTGCATTCCTCATTGGATTAGAAGTGAA
TAGTGATATCGTCCACATGGCGAGCTATGCTCCACTCTTCGTAAATGAAAACGACCGCCA
GTGGACCCCAGATGCAATAGTCTTCAACTCCTGGCAACAGTATGGAACTCCTAGCTACTG
GATGCAGACATTTTTCCGTGAATCAAGTGGTGCTGTGATCCATCCTATGAGACTCAATTC
CAGCTACTCTGGTTCATTGGCAGCATCTGCAATTACCTGGGGAGACAATGAGGATATCTT
CCTGAGGATAAAGATTGTGAACTTTGGGTCAAATGCTGTGAACCTCACCTTATCTGCAAT
CGGACTGCAAGCTGGTGTCAATACGTCACGCTCAGCTGTCACCGTTCTCACATCCGACAA
TGTGTTGGATGAGAACACGTTCGATGACCCACGTAACGTTGTGCCAGAAAGAAGTGACCT
ACCCAATGCTGCAGAAGAGATGCAAGCCATGCTTGTTCCTCACTCTTTCACTTCATTTGA
TCTGGCTCTGGATCAGTACGGCGAGCTCGTAGCTGAGATGTGAAGAAGCAATGGTGAGAG
GTTTAGGCGAGGTGGAAACAAGATGATTTACATGAGGCATTGATCAGGTCTGGTTCATGG
ATTCCAGAAAGCAAGCAAAATGTGAAGTTCTCGTCCCTGGTTCATTGGAAGTATAGATAA
ATAGATATAGGTTTGTTTTTCTGGTATTTGCCTATCAGGCAAAATGTGATCGGTCCTTGT
ATCCATGACACACTACTTGTTGACCTGCCGCAAGCATATAAGAAAATATAAATGAAAAGG
TTCCCACGAAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_10876.2	2447	0.0	73 - 2420	100	2348 / 2348	CUST_21932_PI390587928	ABC03596 ABC05239 ABC12712 ABC52669
MLOC_10876.3	2683	0.0	13 - 540	100	528 / 528	None	ABC03596 ABC05239 ABC12712 ABC52669
MLOC_10876.4	2512	0.0	1409 - 2422	100	1014 / 1014	None	ABC05239 ABC52669
MLOC_10876.1	1483	0.0	83 - 1167	100	1085 / 1085	CUST_21932_PI390587928	ABC05239 ABC52669
MLOC_10876.6	1589	0.0	1 - 366	99	363 / 366	None	ABC05239
MLOC_10876.5	1316	7e-89	1138 - 1316	100	179 / 179	None	ABC05239
MLOC_56099.3	2736	0.0	432 - 2234	77	1396 / 1818	CUST_13735_PI390587928	ABC03596 ABC05239 ABC12712
MLOC_10876.7	521	0.0	31 - 521	99	489 / 491	None	ABC03596 ABC05239 ABC12712
MLOC_44256.5	2455	0.0	432 - 2017	77	1234 / 1605	CUST_13880_PI390587928 CUST_13892_PI390587928	ABC03596 ABC05239 ABC12712
MLOC_44256.3	2521	0.0	501 - 2086	77	1234 / 1605	CUST_13880_PI390587928	ABC03596 ABC05239 ABC12712
MLOC_44256.2	2524	0.0	501 - 2089	77	1234 / 1608	CUST_13880_PI390587928	ABC03596 ABC05239 ABC12712
MLOC_56099.4	1574	2e-129	868 - 1574	79	566 / 719	None	ABC03596 ABC05239 ABC12712
MLOC_11765.1	699	3e-87	2 - 699	76	541 / 715	None	ABC05239