barSeed - Barley Seed Development Database

Probe ABC11852

Source Contig ABC11852

barSeed

Links

Affymetrix Source Sequence (1356 bp)

>ABC11852 1356
GATACGAAGGAGGGCTGGAGCTGATGACAAGCCATTAAGAATGGTCAAAACTGTGCTGCA
TGAACTTGTCAAGCTACGAGGCACAGCAATAAAAGGTCACCTTTCAATGGTTCCTATAGA
CGCTGAGCCTCAGCCAATCATCCTGGCATACATTGATCTTAATCTTCAGACCCTTGCAGC
AGCTAGGATGTTAACCCCATCTGGACCTATGGGTCAAACTCACTGGGGTGATGCTGCATC
GAACACTCCAAATCCATCAATTCATTCAACGGATGCACAATTGAAGCAAGAGCTTGCTGC
CGTATTCAAAAAAATCGGTGACAAGCAAACATGTACGATTGGTTTGTATGAACTCTACCG
GATAACCCAGCTGTACCCAAAGGTTGATATATTCGCTCAGCTTCAGAATGCAAGCGAAGC
ATTTAGAACGTACATCAGAGATGGGCTAGCTCAGGTGGAGAAGAATGCCGCAGCTGGAAG
AACACCCTCTAGTCTTCCATTGTCAACGCCACCTCCAATAGCATCAATACCCTCTCCAAA
GTTTGCACCTTCTCCTGTTCATACAAAATCGATAAGTAGCAAAACGGATTGTAATGAAGA
CGACCCCTTCAGAGTCCAAGGAGACTCTGATTTTAGGTTACAATCAGATCAACAGACCGA
TAGATTCCAATCCTCAGGGACATTGGATGCTCTCAGGGAAAGGATGAAAAGCATCCAAGC
CGCAGCTGTAGGTGGCAATTTCGATGGACCTCAGACTCGGCCATTGTCAAGTACTAATGG
CAGTACTCTCCATGGGGGGGCACGAGTGGATGGTGAGCCACAAACACAAAGTAATATTCC
ACCCATGGACGAGAGAGCATTATCTGGGCTGCAAGCACGGATGGAGAGGTTAAAGAGTGG
GTCTATGGAACCACTCTAAATATAGTTGACAGTACTATGAGAAATACCGACCATTGTAAT
TGACTGTAAATTTGCAGCATAGTCATGCTATTTGTAGATAGGTATGTCGAGGTACTACAT
GATGCGGGGCCGACGTTTTGTAACCCCCGTTCCTGGTCAACCCATTCTTGAATAGTATTC
TGGTGTAGTTGTAGAGAAGCTAGTCAGAGGTTTTGCTTGTAGCTTGCCCGTTGAGGGCCT
AATTAGTATTTTGACACATTTTTTGGTCCGATTGAGTTTTCCTGTGTTGTATAGCAATAC
AATTGAGTGTGATGAATTAACTGGATCAGTACGATGCGGTTAGGGGTACACTAGTGTTGG
CGTGGCTTCTTAGATTTTTGTGATGTAAAAATTTGCATAAAGTGGCTATTCTTTCTGTTG
AGTCCTATGCAGCCCATGCATAAAGTGAGCGCAAGC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_37273.5	2408	0.0	1059 - 2408	100	1350 / 1350	CUST_8940_PI390587928 CUST_21953_PI390587928	ABC11852
MLOC_37273.8	2420	0.0	1055 - 2413	99	1356 / 1359	CUST_21953_PI390587928 CUST_8940_PI390587928 CUST_44_PI415269222	ABC11852
MLOC_37273.7	2421	0.0	1056 - 2414	99	1356 / 1359	CUST_8940_PI390587928 CUST_44_PI415269222	ABC11852
MLOC_37273.4	2381	0.0	1061 - 2381	100	1321 / 1321	None	ABC11852
MLOC_37273.3	2453	0.0	1147 - 2453	100	1307 / 1307	None	ABC11852
MLOC_37273.2	2442	0.0	1905 - 2442	100	538 / 538	None	ABC11852
MLOC_37273.9	2404	0.0	1772 - 2404	100	633 / 633	CUST_21953_PI390587928	ABC11852
MLOC_37273.6	2488	0.0	1813 - 2488	100	676 / 676	CUST_8940_PI390587928	ABC11852
MLOC_37273.1	2278	4e-109	2064 - 2278	100	215 / 215	None	ABC11852