barSeed - Barley Seed Development Database

Probe CUST_44_PI415269222

Source Contig TA40918_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_44_PI415269222	Hv_44K_v2	TGCATAAAGGGCTATTCTTTCTGTTGAGTCCTATGCAGCCCATGCATAAAGTGAGCGCAA	1305	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.626	2.540	1.102	0.734	0.519	0.685
Raw	37.811	54.749	21.675	22.050	3.996	7.648

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37273.8	2420	7e-23	2351 - 2411	98	60 / 61	plus	ABC11852
MLOC	MLOC_37273.7	2421	7e-23	2352 - 2412	98	60 / 61	plus	ABC11852
JLOC1	JLOC1_24120.3	2523	4e-23	2430 - 2490	98	60 / 61	plus
JLOC1	JLOC1_24120.2	2520	4e-23	2427 - 2487	98	60 / 61	plus
JLOC1	JLOC1_24120.1	2526	4e-23	2433 - 2493	98	60 / 61	plus
Harvest21	ABC11852	1356	1e-23	1294 - 1354	98	60 / 61	plus	ABC11852
Harvest35	U35_4986	1356	1e-23	1294 - 1354	98	60 / 61	plus

Contig Sequence (1366 bp)

>TA40918_4513 1366 Hv_44K_v2
CGGCACGAGGATACGAAGGAGGGCTGGAGCTGATGACAAGCCATTAAGAATGGTCAAAAC
TGTGCTGCATGAACTTGTCAAGCTACGAGGCACAGCAATAAAAGGTCACCTTTCAATGGT
TCCTATAGACGCTGAGCCTCAGCCAATCATCCTGGCATACATTGATCTTAATCTTCAGAC
CCTTGCAGCAGCTAGGATGTTAACCCCATCTGGACCTATGGGTCAAACTCACTGGGGTGA
TGCTGCATCGAACACTCCAAATCCATCAATTCATTCAACGGATGCACAATTGAAGCAAGA
GCTTGCTGCCGTATTCAAAAAAATCGGTGACAAGCAAACATGTACGATTGGTTTGTATGA
ACTCTACCGGATAACCCAGCTGTACCCAAAGGTTGATATATTCGCTCAGCTTCAGAATGC
AAGCGAAGCATTTAGAACGTACATCAGAGATGGGCTAGCTCAGGTGGAGAAGAATGCCGC
AGCTGGAAGAACACCCTCTAGTCTTCCATTGTCAACGCCACCTCCAATAGCATCAATACC
CTCTCCAAAGTTTGCACCTTCTCCTGTTCATACAAAATCGATAAGTAGCAAAACGGATTG
TAATGAAGACGACCCCTTCAGAGTCCAAGGAGACTCTGATTTTAGGTTACAATCAGATCA
ACAGACCGATAGATTCCAATCCTCAGCAGGGACATTGGATGCTCTCAGGGAAAGGATGAA
AAGCATCCAAGCCGCAGCTGTAGGTGGCAATTTCGATGGACCTCAGACTCGGCCATTGTC
AAGTACTAATGGCAGTACTCTCCATGGGGGGGCACGAGTGGATGGTGAGCCACAAACACA
AAGTAATATTCCACCCATGGACGAGAGAGCATTATCTGGGCTGCAAGCACGGATGGAGAG
GTTAAAGAGTGGGTCTATGGAACCACTCTAAATATAGTTGACAGTACTATGAGAAATACC
GACCATTGTAATTGACTGTAAATTTGCAGCATAGTCATGCTATTTGTAGATAGGTATGTC
GAGGTACTACATGATGCGGGGCCGACGTTTTGTAACCCCCGTTCCTGGTCAACCCATTCT
TGAATAGTATTCTGGTGTAGTTGTAGAGAAGCTAGTCAGAGGTTTTGCTTGTAGCTTGCC
CGTTGAGGGCCTAATTAGTATTTTGACACATTTTTTGGTCCGATTGAGTTTTCCTGTGTT
GTATAGCAATACAATTGAGTGTGATGAATTAACTGGATCAGTACGATGCGGTTAGGGGTA
CACTAGTGTTGGCGTGGCTTCTTAGATTTTTGTGATGTAAAAATTTGCATAAAGGGCTAT
TCTTTCTGTTGAGTCCTATGCAGCCCATGCATAAAGTGAGCGCAAG

Homology of Contig TA40918_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi2g53267.2	1995	2e-166
Arabidopsis v10	AT2G35630.1	1978	3e-93	\| Symbols: MOR1, GEM1 \| ARM repeat superfamily protein \| chr2:14966828-14980361 FORWARD LENGTH=1978