barSeed - Barley Seed Development Database

Probe CUST_21953_PI390587928

Source Contig U35_28425

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21953_PI390587928	Hv_44K_v2	GAGTGGGGAATTGGTTTCTCGCTCAATGGCAGGATCAATGATGTCAAGTAGGGAAAATTT	402	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.008	2.827	1.234	0.647	0.354	0.247
Raw	867.795	1000.822	478.743	338.640	76.209	57.273

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37273.8	2420	7e-23	284 - 343	98	59 / 60	plus	ABC11852
MLOC	MLOC_37273.9	2404	7e-23	244 - 303	98	59 / 60	plus	ABC11852
MLOC	MLOC_37273.5	2408	7e-23	288 - 347	98	59 / 60	plus	ABC11852
JLOC1	JLOC1_24120.3	2523	4e-23	366 - 425	98	59 / 60	plus
JLOC1	JLOC1_24120.1	2526	4e-23	366 - 425	98	59 / 60	plus
Harvest21	ABC27288	466	3e-25	403 - 462	100	60 / 60	plus
Harvest35	U35_28425	466	3e-25	403 - 462	100	60 / 60	plus

Contig Sequence (466 bp)

>U35_28425 466 Hv_44K_v2
TCTCTTCCCAGACTGCTNTCCCTATATATTGGAGGGGCTGCGCTCCAAGAACAACCGAAC
TAGGATAGAGTGTGTTGATATTATTGGATACTTCATGGATCATAACGGGACTGAGGTTGG
TGGCTTGTTGAAAAATTTGCCATCTGTCGCGGCATTAACAGCAGAGCGGGATGGAGAAAT
CAGAAAAGCCGCTCTTAATACACTTGCCACTGCTTACAAGAACCTTGGGGATTATGTATG
GCGATATGTTGGAAAACTTTCAGATGCCCAAAGAAGTATGCTCGATGATAGGTTTAAGTG
GAAGGCTCGAGAAATGGATAAGAGGAGAGAAGGAAGACCTGGTGATGCTCGAGCAGCATT
GAGGCGTTCAGTCAGAGAGAACGGATCCGATGTAGCAGAACAGAGTGGGGAATTGGTTTC
TCGCTCAATGGCAGGATCAATGATGTCAAGTAGGGAAAATTTCGGG

Homology of Contig U35_28425 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi2g53267.1	1994	8e-82
Arabidopsis v10	AT2G35630.1	1978	3e-61	\| Symbols: MOR1, GEM1 \| ARM repeat superfamily protein \| chr2:14966828-14980361 FORWARD LENGTH=1978