barSeed - Barley Seed Development Database

Probe ABC11623

Source Contig ABC11623

barSeed

Links

Affymetrix Source Sequence (1877 bp)

>ABC11623 1877
TCCTAATCCAGTGCTAAATTATTACCTACTTACAAGGAATGGGCAGCTTGGGCACCAACC
CCACGTCCTTCTCCGCCTTCCCCGACGACAAGGCGGCGTTCGAGCCGCTCAACCCCGAAG
ATGTCCGTGCATACCTTCACAAGGCCGTTGATTTCATCTCCGACTACTACACCAACGTCG
AGTCCATGCCCGTTCTTCCTAACGTGAAGCCGGGATACCTGCAAGATGAGCTCACCGCGT
CCCCGCCGACACACTCCGCGCCGTTCGACGTCACCATGAAGGAGCTCAGGACATCCGTCG
TCCCCGGCATGACGCACTGGGCTAGCCCCAACTTCTTCGCCTTCTTCCCCTCCACCAACA
GCGCCGCAGCCATCGCCGGCGACCTCATCGCCTCGGCCATGAACACCGTCGGATTCACGT
GGCAAGCCTCGCCTGCAGCCACCGAGATGGAGGTCCTCGCTCTGGACTGGCTTGCGCAGC
TCCTGCGCCTGCCCACCACCTTCATGAATCGCACCAGCACTGGTCGTGGCACCGGCGGTG
GTGTCATCCTCGGCACAACGAGCGAGGCAATGCTTGTCACGCTAGTTGCCGCCCGTGATG
CAGCACTGCGTCGAAGCGGCTCTGTCGGCGTGTCTGACATCCCACGCTTGGCTGTGTATG
CTGCCGACCAGACTCACTCCACGTTCTTCAAGGCGTGTCGCCTTGCAGGCTTCGACCCCG
CCAACATTCGCTCCATCTCTACTGGGCCGGAAACAAACTATGGGCTCGACCCAGCCAAGC
TTCTCGAGGTCATGCAAGCTGATGCCGACGCCGGTCTTGTGCCAACATATGTTTGCGCCA
CCGTGGGCACCACGTCTTCCAATGCCGTCGACCCGGTGGGCGCCGTTGCCGATGTTGCCG
CCATGTTCAATGCGTGGGTCCATGTCGATGCTGCTTACGCTGGCAGCGCGTGTATCTGCC
CGGAGTTTCGCCACCATCTCGACGGTGTCGAGCGCGTGGACTCCATTAGCATGAGCCCAC
ACAAATGGCTTCTCACGTGCCTCGACTGTACATGTCTCTATGTCCGTGACGCTCACCGAC
TGAGCGACTCATTGGAGACCAACCCGGAGTACCTCAAGAACGACGTCACGGATTCCGGTG
AGGTCACCGATCTTAAGGACATGCAGGTCGGTGTCGGCCGACGCTTCCGTGGTCTTAAGC
TTTGGATGGTCATGCGCACCTACGGTACCGCAAAGCTCCAAGAGCACATCCGTAGTGACG
TCGCCATGGCCAAGATGTTTGAAGATTCCGTCCGTGCCGACAACAGGTTTGAAGTGGTCG
TGCCGAGGAACTTTGCTCTTGTGTGCTTTAGGATCAAGGCAAGGGGAGACATGACGGAGG
AGGATGCCGACGAGGTCAACCGCCTTCTAATGGAGAATCTAAACAAGACTGGCAAGGCTT
ATCTTGCGCACACCGTGGTCGGTGACAGATTTGTGCTTCGTTTTGCTGTTGGGTCATCGC
TGCAGGAGGAGAGGCATGTGAGAAGTGCATGGGACCTCATCAAGAAGACTACCAGCAGTA
TCATGGATTAAGTGCACTGACCAACTGTTCAGGGAGCTATACAAATCCCTATATTTAGGG
GACAACTATTATTTTATTTTTTTCCTTTGATTCTGATTATTATTTATTTAGACATGTGGT
TCTTATTCCTTTTTGTGATCTATAACGACCGAGGGTCTATATATATATAGCAGGCCGGTA
CCAAAGAAGTTGATTATAGACTGTAAAAAGACTTTGTATTATAGATCAAGGGTCTATATA
TATAGCAGGCCGGCACCAAAGAAGTTTTTTATATTGAATAAACATGAGATAATTTTTTGT
AAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_18474.1	1882	0.0	5 - 1754	88	1553 / 1758	CUST_30799_PI390587928	ABC11623 ABC23667 ABC44857
MLOC_28616.1	999	0.0	1 - 903	90	810 / 903	None	ABC11623
MLOC_50486.1	686	0.0	1 - 686	96	658 / 686	None	ABC11623
MLOC_31146.1	500	0.0	1 - 500	100	500 / 500	None	ABC11623
MLOC_67930.1	702	0.0	1 - 675	90	608 / 677	CUST_24183_PI390587928	ABC11623 ABC23667 ABC44857
MLOC_72748.1	660	0.0	101 - 660	91	510 / 560	CUST_24184_PI390587928	ABC11623
MLOC_23938.1	604	0.0	10 - 570	90	507 / 562	CUST_27387_PI390587928	ABC11623
MLOC_72749.1	660	0.0	1 - 626	87	544 / 626	None	ABC11623 ABC44857
MLOC_29571.1	430	2e-153	1 - 430	90	385 / 430	CUST_174_PI390587928	ABC11623
MLOC_60336.1	605	3e-116	205 - 605	86	345 / 401	None	ABC11623 ABC23667 ABC44846 ABC44857
MLOC_19721.1	602	1e-100	3 - 343	86	294 / 341	CUST_1263_PI390587928	ABC11623 ABC44846 ABC44857
MLOC_68960.1	210	2e-99	1 - 210	98	206 / 210	None	ABC11623
MLOC_35433.1	228	1e-51	1 - 124	97	120 / 124	None	ABC11623