barSeed - Barley Seed Development Database

Probe CUST_24184_PI390587928

Source Contig U35_18458

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24184_PI390587928	Hv_44K_v2	TACACCAACGTCGAGTCCATGCCCGTCCTCCCAAACGTGAAACCGGGATATCTGCAAGAC	237	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.596	2.047	1.312	0.668	0.719	0.545
Raw	73.195	150.505	84.256	61.448	23.114	21.289

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72748.1	660	2e-24	237 - 296	100	60 / 60	plus	ABC11623
JLOC1	JLOC1_48409.1	582	8e-25	233 - 292	100	60 / 60	plus
Harvest21	ABC11622	568	3e-25	238 - 297	100	60 / 60	plus
Harvest35	U35_18458	570	3e-25	238 - 297	100	60 / 60	plus

Contig Sequence (570 bp)

>U35_18458 570 Hv_44K_v2
AATTACCACCACAAACCTTTCCGGCCGGCAGCAAACCTAGCTACCTTCCCCTTCTTTAAC
TAAGCCAAGCTTCGCTGCTTCCCACCGGCTTGCTCCTAAAAAATGGGCAGCTTGGACGCC
AACCCAATGACGACCTTCTCCGCCTTCCCCGACGACAAGGCGGCAGCGTTCGAGCCGCTA
AACCCCGAAGATGTCCGCGCATACCTCCACAAGGCCGTCGACTTCATCTCCGACTACTAC
ACCAACGTCGAGTCCATGCCCGTCCTCCCAAACGTGAAACCGGGATATCTGCAAGACGAG
CTCAGCGCGTCCCCGCCGACCCACTCGGCGCCGTTCGATGTCACCATGAAGGAGCTAAGG
ACCTCCGTCGTCCCCGGCATGACGCACTGGGCTAGCCCCAACTTCTTCGCCTTTTTCCCC
TCCACCAACAGCGCCGCGGCTATCGCCGGCGACCTCATCGCCTCCGCCATGAACACCGTC
GGATTCACGTGGCAGGCCTCTCCTGCGGCAACCGAGATGGAGGTTCTCGCGCTCGACTGG
CTTGCGCAGCTNCTTCGCCTGCCCACCACC

Homology of Contig U35_18458 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g04540.1	515	2e-69	protein\|decarboxylase, putative, expressed
Brachypodium v1_2	Bradi3g14740.1	511	6e-75
Arabidopsis v10	None