barSeed - Barley Seed Development Database

Probe ABC44857

Source Contig ABC44857

barSeed

Links

Affymetrix Source Sequence (588 bp)

>ABC44857 588
ATGGTCATGCGCACCTATGGTACCGCAAAGCTTCAGGAACACATCCGTAGCGACGTCGCC
ATGGCCATGATGTTTGAAGATCTCGTACGTGCCGACGAAAGGTTCGAGGTGGTCGTACCA
AGGAACTTTGCTCTTGTGTGCTTTAGGATCAAGGCAACTGGATCCATGACGGAGGAGGAT
GCAGATGAGGCCAATCGTGTGCTTATGGAGAATCTGAACAAGACCGGTAAAGCTTATCTA
GCACACACGGTGGTTGGTGACAGGTTCGTGCTTCGGTTTGCTGTGGGATCGTCCCTGCAG
GAGGAGAGGCATGTGAGGAGTGCATGGGATCTCATCAAGAAGACTACTAGCAGTATCATG
GATTAAGTGGATGGACCTATTGATGCACAAAGCTCCAGAAGCCACACAAATCCCTATATT
TGGGATATAATTATTCTTTTGTATTTATCTTTTTTTGCTATGATTCGGGTTATTATTAGT
TTGGACATTTGTTTCTTATTCCGTTTTGTGATTTATATTGGCCGAGGGTATATCTATAGT
AGACCGGTCCCCACCAAAATGATTAGATTGTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_72749.1	660	0.0	258 - 660	100	403 / 403	None	ABC11623 ABC44857
MLOC_67930.1	702	3e-151	92 - 638	85	465 / 550	CUST_24183_PI390587928	ABC11623 ABC23667 ABC44857
MLOC_18474.1	1882	7e-148	5 - 580	83	481 / 578	CUST_30799_PI390587928	ABC11623 ABC23667 ABC44857
MLOC_60336.1	605	3e-122	172 - 605	85	369 / 434	None	ABC11623 ABC23667 ABC44846 ABC44857
MLOC_19721.1	602	3e-116	3 - 397	86	342 / 398	CUST_1263_PI390587928	ABC11623 ABC44846 ABC44857