barSeed - Barley Seed Development Database

Probe ABC11307

Source Contig ABC11307

barSeed

Links

Affymetrix Source Sequence (1216 bp)

>ABC11307 1216
GTCTGCACGTCGTCTACTTGTCATTGCAGAATGCAAATTACAGAGTAGTACAGTTGACTA
CCATCCAGCTCACTAGTCACTAGTACCAGCGCAAATTTGCAGCTGCCGAAGCCGACGCCG
CCGCAGCCGCCGCCGCCGTTGCCGTTATCCTGCCGCCGCCGCCTTGTTCGAAGAAATGGG
CAAAAGGGCCATCCGATACGCCGTGGTGGATGCCTTCGCGGCTGAGCCGTTCAAGGGCAA
CCCCGCCGCGGTATGCCTCCTCGAAGAGGAGGGCGCCTCCGCGGCCGTGGACGACCGGTG
GATGCAGTCCGTCGCCGCCGAGTTCAACCTCTCGGACACCGCCTTCCTCGCCCGTGACTC
CTCCGGGGCAGCCGGCGCAGCCCCGCGGTTCCACCTCCGATGGTTCACTCCCGTCACCGA
GGTTGACCTCTGCGGCCACGCGACGTTGGCCTCTGCGCACTTCCTCTTCACGACTGTTCT
TCCGGAGCATGGCAAGCTGGAGTTCACGACCAGGTCCGGGACCCTAACTGCCAAGACAGT
TCCTGCACCAGGGAACACTGGCGTCCCAGGTGACAAGCAGGGGAAGCTGTTTATTGAGCT
GGATTTCCCCATGATTGGCTTTCTGGACTGCAATGAAATGCCGTTGATTCCGGAGACCCT
AAACGGTGCACCCATTGTCAGCGTTCACAAATCGGCGACCGACGGCGACCTCATTGTGGA
ACTTTCTTCGGGAAAAGAAGTTGTGGATATCCTTCCTAGCATCGATGAAATTAGAAACTT
GGCCTGCAGGGGTCTCATTGTTACAGGACCGGCGCCTGCTGGATCTGGTTATGACTTCTT
TACACGTTTCTTCTGCCCAAAATTTGGGATAGATGAGGACCCCGTTACTGGCAGTATACA
TTGTGTTTTGGCACCCTATTGGGGCAGAAAGCTGGGGAAGCAAAAATTGACGGCATTTCA
AGCATCTCCCAGGGGTGGAACACTATACCTGCAACTGGATGACGCAAATCAGAGAGTGCA
AATCCAGGGAGAAGCTCTAACTGTGATGGATGGAACGCTCCTAGCCTAGCCAGCATGCCT
TTGGCAATTTCGCATCCATGATCCATCTACTCGTATATGCTTTGAATTGAAGGACAACCA
TTCGTCCATCTACTCGTATATTCATGGAGTTATGATTTGACTTTGGATAGTGGTGATTCT
GTTTGTTGTTATATGC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK252135.1	1221	0.0	69 - 1159	99	1090 / 1091	CUST_9646_PI390587928	ABC11307 ABC34150
MLOC_12275.2	1534	0.0	473 - 1358	85	768 / 907	CUST_21940_PI390587928 CUST_33233_PI390587928	ABC11307 ABC16950
MLOC_34980.1	873	0.0	397 - 870	99	471 / 476	None	ABC11307
MLOC_12275.4	1543	0.0	421 - 1257	85	726 / 858	CUST_21940_PI390587928	ABC11307 ABC16950
MLOC_34980.3	824	0.0	287 - 743	99	454 / 459	None	ABC11307
MLOC_12275.7	998	0.0	169 - 870	84	606 / 723	CUST_21940_PI390587928	ABC11307
MLOC_30979.1	992	3e-179	67 - 407	100	341 / 341	CUST_9646_PI390587928	ABC11307 ABC34150
MLOC_12275.6	1164	9e-175	220 - 872	84	564 / 674	CUST_21940_PI390587928	ABC11307
MLOC_34980.2	1079	1e-78	348 - 510	99	162 / 163	None	ABC11307
MLOC_22410.1	250	1e-128	1 - 250	100	250 / 250	None	ABC11307
MLOC_22410.2	253	7e-106	1 - 209	100	209 / 209	None	ABC11307