barSeed - Barley Seed Development Database

Probe CUST_33233_PI390587928

Source Contig U35_7923

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33233_PI390587928	Hv_44K_v2	GGTTTGTGAGTACTCCATATGTGTTGTGTTTGTATCCGTTTTCGTCTGATTTTTCATTAA	579	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.121	1.368	1.277	0.963	0.336	0.294
Raw	30.685	63.463	48.320	59.666	6.111	6.198

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12275.1	1422	2e-24	3 - 62	100	60 / 60	minus	ABC16950
MLOC	MLOC_12275.2	1534	2e-24	3 - 62	100	60 / 60	minus	ABC11307 ABC16950
JLOC1	JLOC1_8231.3	1565	8e-25	1420 - 1479	100	60 / 60	plus
JLOC1	JLOC1_8231.2	1621	8e-25	1476 - 1535	100	60 / 60	plus
JLOC1	JLOC1_8231.1	1635	8e-25	1490 - 1549	100	60 / 60	plus
Harvest35	U35_7923	678	3e-25	580 - 639	100	60 / 60	plus

Contig Sequence (678 bp)

>U35_7923 678 Hv_44K_v2
GTATACACTGTGTATTGGGACCCTATTGGGGTAGAAAGCTTGGGAAGCAAAAACTGAAGG
CATTTCAAGCATCTCCAAGGGGTGGAACGCTATACCTGGAACTGGATGACGCAAATCGGA
GAGTGAAAATCCAAGGAGAAACTATTACTGTCATGGCCGGGACACTCCTGGTGTAATATG
CATGCTGCTTTGTGCTGGTTTAAAAACTTCCAGTGGTTATTTGAAGGCTACTCCGGCAGT
GTATGATCTGAGCAAGGCCACTAATATTTTCCAGTAACCTCTTCCCACGTAGTTCTATCC
TAGCATTCCGCTAAACCTCACAGAATTGTTGCTTAAAATATTCATCGACACAATTGCTGT
AGTGGCAGATAGTTATTATGAGATCGAATCTCTTGTAGTAGTACATAGGACTTGTTGCTG
AAAGTGCAAATTCAGGGAGGATTTGGTTGCCTTCTGCCGAGGTGTTCTCATTGGGGGTTG
TTTTGCGATATAGAAGTGTGAGGGTTTGTGGTTGTTACAGGTTGTGTATGTTTGTCAGAT
CGATCGTGAATTCGTGATCGTGTTGTCAGGGAGTTTCATGGTTTGTGAGTACTCCATATG
TGTTGTGTTTGTATCCGTTTTCGTCTGATTTTTCATTAACTAACAGAACAATTTTTTTTG
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_7923 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None