barSeed - Barley Seed Development Database

Probe CUST_9646_PI390587928

Source Contig U35_18903

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9646_PI390587928	Hv_44K_v2	ACCATTCGTCCATCTACTCGTATATTCATGGAGTTATGATTTGACTTTGGATAGTGGTGA	1149	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.958	1.434	1.157	0.863	0.342	0.434
Raw	740.912	1696.649	1213.477	1475.565	194.252	273.777

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252135.1	1221	2e-24	1080 - 1139	100	60 / 60	plus	ABC11307 ABC34150
MLOC	MLOC_30979.1	992	2e-24	87 - 146	100	60 / 60	minus	ABC11307 ABC34150
JLOC1	JLOC1_20421.1	996	8e-25	848 - 907	100	60 / 60	plus
Harvest21	ABC34150	613	3e-25	523 - 582	100	60 / 60	plus	ABC34150
Harvest21	ABC11307	1216	3e-25	1137 - 1196	100	60 / 60	plus	ABC11307
Harvest35	U35_38259	613	3e-25	523 - 582	100	60 / 60	plus
Harvest35	U35_18903	1240	3e-25	1150 - 1209	100	60 / 60	plus

Contig Sequence (1240 bp)

>U35_18903 1240 Hv_44K_v2
CTTGTCATTGCAGAATGCAAATTACAGAGTAGTACAGTTGACTACCATCCAGCTCACTAG
TCACTAGTACCAGCGCAAATTTGCAGCTGCCGAAGCCGACGCCGCCGCAGCCGCCGCCGC
CGTTGCCGTTATCCTGCCGCCGCCGCCGCCGTTGCCGTTATCCTGCCGCCGCCGCCTTGT
TCGAAGAAATGGGCAAAAGGGCCATCCGATACGCCGTGGTGGATGCCTTCGCGGCTGAGC
CGTTCAAGGGCAACCCCGCCGCGGTATGCCTCCTCGAAGAGGAGGGCGCCTCCGCGGCCG
TGGACGACCGGTGGATGCAGTCCGTCGCCGCCGAGTTCAACCTCTCGGACACCGCCTTCC
TCGCCCGTGACTCCTCCGGGGCAGCCGGCGCAGCCCCGCGGTTCCACCTCCGATGGTTCA
CTCCCGTCACCGAGGTTGACCTCTGCGGCCACGCGACGTTGGCCTCTGCGCACTTCCTCT
TCACGACTGTTCTTCCGGAGCATGGCAAGCTGGAGTTCACGACCAGGTCCGGGACCCTAA
CTGCCAAGACAGTTCCTGCACCAGGGAACACTGGCGTCCCAGGTGACAAGCAGGGGAAGC
TGTTTATTGAGCTGGATTTCCCCATGATTGGCTTTCTGGACTGCAATGAAATGCCGTTGA
TTCCGGAGACCCTAAACGGTGCACCCATTGTCAGCGTTCACAAATCGGCGACCGACGGCG
ACCTCATTGTGGAACTTTCTTCGGGAAAAGAAGTTGTGGATATCCTTCCTAGCATCGATG
AAATTAGAAACTTGGCCTGCAGGGGTCTCATTGTTACAGGACCGGCGCCTGCTGGATCTG
GTTATGACTTCTTTACACGTTTCTTCTGCCCAAAATTTGGGATAGATGAGGACCCCGTTA
CTGGCAGTATACATTGTGTTTTGGCACCCTATTGGGGCAGAAAGCTGGGGAAGCAAAAAT
TGACGGCATTTCAAGCATCTCCCAGGGGTGGAACACTATACCTGCAACTGGATGACGCAA
ATCAGAGAGTGCAAATCCAGGGAGAAGCTCTAACTGTGATGGATGGAACGCTCCTAGCCT
AGCCAGCATGCCTTTGGCAATTTCGCATCCATGATCCATCTACTCGTATATGCTTTGAAT
TGAAGGACAACCATTCGTCCATCTACTCGTATATTCATGGAGTTATGATTTGACTTTGGA
TAGTGGTGATTCTGTTTGTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18903 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16146.1	310	2e-148	protein\|phenazine biosynthesis protein, putative, expressed
Brachypodium v1_2	Bradi2g09880.1	301	3e-180
Arabidopsis v10	AT1G03210.1	286	8e-88	Phenazine biosynthesis PhzC/PhzF protein \| chr1:782948-784240 FORWARD LENGTH=286