barSeed - Barley Seed Development Database

Probe ABC11173

Source Contig ABC11173

barSeed

Links

Affymetrix Source Sequence (552 bp)

>ABC11173 552
GCACGAGGGGGTCTTCTCTTTTGAAAAGCGTACTCGGCCCGGAGGCGCGTTCTGTTTCCA
GTCAGGGACCTGTTTGTAGGAATTTATTTTTATGGATAGGTCCCTAAACTTCATCGGGTC
TTATCTTTTTGCTCGGGACTCCGATTGAGGTGATTCCAAAACCCTCGGCTTCGTCTCGTC
GATCCCGTCATGTTGATAGCATTTTCACAAGGTGGTGAGACTGTGAAAATGACCCTTTTG
CCCTTGTCTCCAATCAGCCCCCTTCGAGAGAGAGCGATGTCTGGCGATCCTTTCCGCGGA
CTCTCAGCACCTCTTCCGGGAGTATTCTTCAACCCCAGGTTCACATAAGGATCCGTCGTT
CGTCGCTAAGGAGACAGAGCATTTGCGGTCTAGGAGCGTAACCGAGTCAGATCCCTGTGG
ATTGGAGCTGCATCAAGACCATGCTGCCTTAGATAGAGCTTTTTTCGCTGCCATTAACCT
TGTAGCTCATCGTGTAAAACTCTTATATTCATTAATAGAAATGCCTATGTTCATGAAAAA
AAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_26300.1	1103	3e-107	49 - 372	88	289 / 327	None	ABC11173
MLOC_45956.1	743	3e-77	1 - 217	91	197 / 217	None	ABC11173
MLOC_9775.1	892	4e-75	593 - 808	90	195 / 216	None	ABC11173
MLOC_32642.1	1270	2e-73	195 - 407	90	192 / 213	None	ABC11173 ABC19832
MLOC_29632.1	1150	1e-70	768 - 984	89	194 / 218	None	ABC11173 ABC11919 ABC24446
AK357550	997	4e-66	675 - 892	88	192 / 219	CUST_3249_PI390587928	ABC11173
MLOC_27832.1	560	8e-53	373 - 560	87	165 / 190	None	ABC11173 ABC21980