barSeed - Barley Seed Development Database

Probe CUST_3249_PI390587928

Source Contig U35_22913

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3249_PI390587928	Hv_44K_v2	GGACGAGATTGTAGTTATTTTAATTATAGATTGGTCCGTGATCTTCTTTCATCCGTATCT	617	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.708	2.721	1.027	0.777	0.600	1.035
Raw	38.217	89.954	31.672	39.807	10.521	19.730

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357550	997	2e-24	620 - 679	100	60 / 60	plus	ABC11173
JLOC1	JLOC1_32106.1	595	8e-25	460 - 519	100	60 / 60	plus
Harvest21	ABC20420	716	3e-25	604 - 663	100	60 / 60	plus
Harvest35	U35_22913	730	3e-25	618 - 677	100	60 / 60	plus

Contig Sequence (730 bp)

>U35_22913 730 Hv_44K_v2
GTGGAGCATATCCATTCTCGTCTCCCCGCTCCTCTGGTCCTCCCCGTCCACTCTCTGGAG
CTTCGGCTCCTCTCCTTGCCTCCAATCGCCGCCATGGCCGCCGCCCCTCCGTTGCTAAAT
TCGCGTTGAGCAGGCCCCTTCTCTCCCGACCGACCTCGCCATCGTCCTTCCCTCTCCGGC
GCAGACCTCCTCAGCCCCTCGCCTAGCCCTCTGACGGCCGGTAGCCGCCACACCATTCGG
CGCCTGAGCCCCGTCCGCCATAGCCAGGGCAACCACGCCCGGGTCCTCCCCAGGCTCCGC
CACCTACGGGGATGGATGCGTCTTGGTCTCCTGAGCTCGCCGATGGCCGGAGCATGACGA
ATGGTGGCCGGAGCCACCGGCAGCCGTCGCCGGCGCTGAGCCCCTTCCCTGTCCTCTGTC
CCGACACGAGAAGGAAGACGGTAGAGGAAGGAGAGAGGAGAGATAGAGGAAAGGGACCCG
ACAGGTGGGCCCCGACCCTACCTGTCGGTGAGACAAGAACCCGCCAGCGTGGATAAGTGA
AGGAGGATTTCTAAAAATACGCTTTACCTTAGAAGAAAACGTATTTCTTGGAAAGGCGCC
AGCGGCTGCGCTCTCAGGGACGAGATTGTAGTTATTTTAATTATAGATTGGTCCGTGATC
TTCTTTCATCCGTATCTTTNTAACTGTGACTCCGATTGGGGTGATTCCAAAGCCCACGTC
TTCGTCTCGT

Homology of Contig U35_22913 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None