barSeed - Barley Seed Development Database

Probe ABC21980

Source Contig ABC21980

barSeed

Links

Affymetrix Source Sequence (777 bp)

>ABC21980 777
GCTCTGTCTTTGCCCTGTGGTCGCGAGGAAGACGACGGTCAGGGAGGAGAGAGAGAGGAG
CCACGTGGGCCCCCATGTCATCCAGTCGGCGTTGACCAGTCCGCCCGCTGACTGGGATTA
GTGGAAGCATATTTCTAAATTACGCTTTCCAACTTCGAAAGCGTACTCGGGCACAGTTTC
GGATGAGAATACGCTTTTGGTTACTGAAAGCATAAACGTTGGAAAGGCTCCTTCTCCTTT
CTCAGCCGTCGGTCGAAAGTGCTGAAGAGTGAGCATTCACCCGTTAGGAACTGTGGTGGA
CACTGTTTTGCCCATCTTACACCCTAAAGAACGAACGCTCGTATCTTCGCGACCGTAGCT
CCGATTCAGCCCCTTCGAGAGCGAACGGCTTCCGGCGATTCCTTCCGCGGACTCTCTGCA
CTTATTCCTGGAGTATTATTCGACCCCAGGTTCACATAAGGATCCGTCGTCCATCATCAA
GGAGCCGGAGTGTTCCCGGGCTAGAAGAGTAACCTAGTCAGATCTGTGTGGATTGGAGCA
GCACCAAGACCATGCTGCCTTAGATAGAGCTTTTCCGCTGCCATCACCCTTGTGATATAT
CTTGTAAGACTAATATATCCATTAACAGAAATGCATGTGTTCATGATACTTGTTGTAATG
CACATGCGAGAGTGATTTCCTGGGATGGTATGTGTGGCGACCGTCTGGCTACAGTGATAA
TCAGGCAGGGCGCCACAATTTACCTCCTCAAGAACAAGCAGGAATTAAGTTGGGGAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_23932.1	1167	0.0	497 - 945	100	449 / 449	None	ABC21980
AK250268.1	2238	3e-93	2037 - 2222	100	186 / 186	None	ABC11919 ABC11920 ABC12877 ABC21980
MLOC_23931.1	1161	0.0	694 - 1061	100	368 / 368	None	ABC21980
AK359465	1453	6e-115	792 - 1166	87	330 / 380	None	ABC21980 ABC49649
MLOC_1959.1	1328	6e-105	225 - 519	90	266 / 295	None	ABC11920 ABC21980
MLOC_3913.1	540	2e-64	3 - 232	86	200 / 232	None	ABC11919 ABC11920 ABC21980
MLOC_27832.1	560	4e-62	373 - 559	90	168 / 187	None	ABC11173 ABC21980