barSeed - Barley Seed Development Database

Probe ABC10669

Source Contig ABC10669

barSeed

Links

Affymetrix Source Sequence (1717 bp)

>ABC10669 1717
CCAAGAACCAACAAACCAAGCCTGCCACCCACTCCTCCCAGGCCGCCGCTTGATCCCCCG
CCCGCCGTCGTCGCGGCGATGTCTCCCGCCTCCGCGCGCGCCCTCACCGTCGACTCCCTC
AACCCAAAGGTGCTGGCGCTCTCGGATCACCTCGGGGGCGCCGTGGCCCGCCGCGCGCAG
CGCATGCAGAAAGAGCTAGAAACAAATCCAGGTGTATACCCTTTCAATGAGATAATCTAT
TGCAACCTTAGCAATCCACATTACCTCGGACAACAGCCAATTAAGTTCTTCCGTGAGGTT
CTTGCCTTGTGTGATTACCCGCATCTTCTAAACTGCAGTGTAACTAGTTCCATATTCAGT
TCTGATGCAATAACAAGGGCAAGAGAGATATTAGACCTCATTCCTGGGAGAGCAATGGGA
GGATACAGCCACTGTCAGGGTACTGAAGGGTTGCGAAATGCAATTGCTGCTGGAATAGCC
ACTCGTGATGCTTTCCCATGCAATGCGGAGGACATTTTCCTGACAGATGGAGCATCCGCG
CCGGTTCATATGGTAATGCACCTATTGATACGAGATGAAAAAGACGGCATCCTTTGCCCA
ATTCCATCACACTTTCTGTACACAAGCTCAATGATCCTGTGTGGTGCTACTCTTGTACCA
TATTACCTTGACGAATCACGAGATTGGGATGTGAGTATTTCGGACCTCAAGAAGCAGCTG
GATGGTGCCCGATCTCAGGGCATCAATGTTAGGGGACTTGTGGTTGTAAATCCAGGCAAC
CCTACTGGACAGGTTCTTGTGCGGGAAAACCAGTGTGAAATAGTGGAATTCTGCAGGAAT
GAAAACCTTGTTCTTCTAGCAGATGAGGTTTACCAAGAAAATGTTTACACAGATGAAAAG
AAATTTATCTCTTTCAAGAAGATAGCACGGTCCATGGGTTTTGGTGAAGGAGATGTTTCC
TTAATATCATTCCATTCAGTTTCTAATGGGTACTATGGAGAATGTGGGAGAAGAGGGGGT
TACATGGAGGTCACTGGCTTCAATTCTGAAGTTCGGAAACAAGTATACAAAGTAGCATCC
CTAAGCTCATGCTCCAACTTAGCCGGCCAGGTCCTCGTGAGCCTAGTCATGAACCCACCA
AAGGTTGGAGATGAGTCATACACCTCTTACCGGGAAGAAAGAGATCGCATTATGTTATCA
TTATCCCGGTGTGCAGAGGCCATGGTGCAGGCATTCAACAGTCTGGGAAGGCCTGACTTG
CAGCAAGGCTGAAGGGGCAATGTTTGTATTCCCATCTGTTCGGCTGCCTAAAAGGGCAAT
TGCGTCTGCTGAGGCAATGAACACCAAACCAGATGTGTTCTACGCTCTCCGCCTTCTTGA
AAACACTGGCATCATCGTCTTGCCTGGTTCTGTGTTCGGACAAGTACCTGGCACATGGCA
TTTCAGATGCACAATCCTGCAACAGGAGGAGAAGGTACAGCTGATCATCTGTCGCTTTAA
GGCGTTCCATGAAGCTTTCATGGAAGAATTTCGCGATTAAAAGTCGCCGGCTTATGTTAT
CTGTAGCACAACTTAGAAAGTCCGGACAGACAAATACATGAGCTTTGTAACTGTCAGTTA
TTACATGATTTATGTCTGGAACAATTGAGTTTGTCCTTTGTACCATTCTGAAGTTAATCT
AAACTTATCCTTTTCAAAACAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_7150.6	1764	0.0	40 - 1749	99	1709 / 1711	CUST_6540_PI390587928	ABC10669
MLOC_7150.1	3056	0.0	1193 - 2902	99	1709 / 1711	CUST_465_PI390587928 CUST_6540_PI390587928	ABC10669 ABC14994
MLOC_7150.4	2662	0.0	801 - 2510	99	1709 / 1711	CUST_6540_PI390587928	ABC10669 ABC14994
MLOC_7150.2	2524	0.0	898 - 2370	99	1473 / 1474	CUST_465_PI390587928	ABC10669 ABC14994
MLOC_7150.5	2131	0.0	520 - 1992	99	1473 / 1474	None	ABC10669 ABC14994
MLOC_7150.3	2084	0.0	594 - 1889	99	1296 / 1297	CUST_465_PI390587928	ABC10669 ABC14994
MLOC_7150.7	1769	0.0	1222 - 1660	100	439 / 439	None	ABC10669
MLOC_7150.8	1455	4e-135	1192 - 1453	100	262 / 262	None	ABC10669
MLOC_7150.9	1593	1e-89	1275 - 1454	100	180 / 180	None	ABC10669